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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00079
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00079
Identity
- Kingdom:
- phage
Quality
77.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 41-129
Domain cluster:
rep: pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00028__D17-130
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uhvA01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.72 | 62.0 | 4.80e-01 | 100.0% | 43.1% |
| 3t1oA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 36.0 | 2.81e-01 | 97.8% | 24.0% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.66 | 31.0 | 3.63e-01 | 87.6% | 63.5% |
| 2ol5A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 55.0 | 4.39e-01 | 100.0% | 67.2% |
| 8egxA04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.60 | 39.0 | 3.77e-01 | 84.3% | 58.4% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.59 | 53.0 | 5.20e-01 | 100.0% | 98.0% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 37.0 | 3.21e-01 | 100.0% | 43.4% |
| 4uwqB00 | 2.60.40.2470 | Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain | 0.59 | 37.0 | 3.45e-01 | 83.1% | 51.4% |
| 5cyxA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.57 | 40.0 | 3.82e-01 | 85.4% | 61.5% |
| 8ediA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 44.0 | 4.22e-01 | 85.4% | 72.1% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 37.0 | 3.93e-01 | 93.3% | 75.3% |
| 1wqsA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 46.0 | 4.41e-01 | 100.0% | 82.5% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 34.0 | 3.78e-01 | 86.5% | 80.3% |
| 2kcaA00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.54 | 48.0 | 4.51e-01 | 100.0% | 84.4% |
| 1o0vA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.50e-01 | 86.5% | 59.1% |
| 2w59B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 3.75e-01 | 82.0% | 64.0% |
| 4ypjA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.57e-01 | 89.9% | 61.3% |
| 4pmwA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 30.0 | 3.03e-01 | 100.0% | 57.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4888819 | 1.1.13.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_1 | 0.81 | 76.0 | 6.98e-01 | 100.0% | 85.6% |
| 5041372 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.75 | 63.0 | 6.36e-01 | 100.0% | 90.0% |
| 4031285 | 1.1.13.64 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal | 0.75 | 65.0 | 6.51e-01 | 100.0% | 92.2% |
| 5002750 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.74 | 66.0 | 6.30e-01 | 100.0% | 92.4% |
| 3966429 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.73 | 63.0 | 6.31e-01 | 100.0% | 93.3% |
| 3972305 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.73 | 63.0 | 6.30e-01 | 100.0% | 93.3% |
| 3977382 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 65.0 | 6.43e-01 | 100.0% | 93.7% |
| 3970015 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.72 | 52.0 | 5.16e-01 | 100.0% | 72.3% |
| 5082881 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 65.0 | 5.77e-01 | 100.0% | 92.8% |
| 4247994 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.69 | 62.0 | 6.02e-01 | 100.0% | 94.0% |
| 3943691 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.69 | 62.0 | 6.07e-01 | 100.0% | 92.6% |
| 3546177 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.62 | 50.0 | 3.74e-01 | 100.0% | 33.6% |
| 3513530 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 42.0 | 3.71e-01 | 89.9% | 63.8% |
| 3736975 | 230.1.1.4 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB | 0.51 | 39.0 | 3.61e-01 | 84.3% | 75.0% |
| 1318663 | 2.1.1.89 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term | 0.50 | 30.0 | 2.88e-01 | 100.0% | 50.0% |