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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00124

Bact-Vir

LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00124

Identity

Kingdom:
phage

Quality

89.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-67
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.82 63.0 6.56e-01 100.0% 88.2%
1yvuA02 2.30.340.10 Mainly Beta › Roll › PAZ domain fold › PAZ domain superfamily 0.73 66.0 5.48e-01 100.0% 91.4%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.72 46.0 5.04e-01 92.7% 90.0%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.30e-01 89.1% 89.1%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.69 61.0 4.95e-01 100.0% 72.5%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.68 60.0 4.86e-01 100.0% 73.1%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.67 59.0 5.33e-01 98.2% 95.9%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 4.87e-01 100.0% 70.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.28e-01 100.0% 78.8%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.24e-01 92.7% 90.3%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 4.39e-01 100.0% 66.9%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 58.0 4.26e-01 100.0% 53.4%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 55.0 3.73e-01 100.0% 40.4%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 4.98e-01 98.2% 94.7%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 56.0 4.22e-01 100.0% 43.6%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 5.02e-01 100.0% 89.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.78e-01 90.9% 79.3%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 4.03e-01 100.0% 43.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 54.0 4.91e-01 100.0% 80.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.82e-01 90.9% 83.6%
1pm3A00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.61 54.0 5.06e-01 100.0% 88.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.74e-01 100.0% 97.9%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 53.0 3.68e-01 100.0% 62.8%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.79e-01 100.0% 84.0%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.61 54.0 4.85e-01 100.0% 89.5%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 4.49e-01 100.0% 82.2%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.87e-01 98.2% 85.5%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 51.0 4.77e-01 100.0% 85.7%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.59 47.0 4.36e-01 92.7% 67.1%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 4.11e-01 74.5% 89.3%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.57e-01 98.2% 86.4%
4fnfA00 2.40.50.50 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 46.0 3.82e-01 87.3% 95.9%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 47.0 4.45e-01 100.0% 81.1%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.58 51.0 4.25e-01 100.0% 69.4%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 36.0 3.89e-01 100.0% 83.3%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.56 45.0 4.29e-01 94.5% 98.5%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.73e-01 96.4% 22.3%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 40.0 2.73e-01 80.0% 32.0%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.54 44.0 3.79e-01 96.4% 70.1%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.11e-01 100.0% 80.5%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 42.0 4.29e-01 89.1% 96.2%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.54 44.0 3.79e-01 98.2% 91.8%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 43.0 2.91e-01 94.5% 33.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 46.0 4.38e-01 100.0% 84.6%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.53 40.0 3.01e-01 85.5% 86.6%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.53 43.0 3.78e-01 96.4% 87.6%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 43.0 2.69e-01 94.5% 26.5%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.35e-01 89.1% 59.3%
6y48D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.65e-01 89.1% 42.6%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.16e-01 76.4% 87.8%
4ntcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 3.22e-01 94.5% 99.2%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 41.0 3.64e-01 100.0% 68.1%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230533 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 62.0 6.83e-01 100.0% 97.8%
4480519 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 60.0 5.90e-01 92.7% 80.0%
4110878 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 57.0 6.23e-01 87.3% 100.0%
5017637 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.72 63.0 6.38e-01 100.0% 96.4%
3495220 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.69 61.0 4.36e-01 100.0% 70.6%
3523144 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.68 61.0 4.16e-01 100.0% 60.5%
3585492 4.1.1.103 beta barrels › SH3 › SH3 › SH3 › SH3_12 0.68 59.0 4.77e-01 100.0% 61.8%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.68 57.0 5.22e-01 100.0% 70.7%
5056991 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.67 59.0 5.20e-01 100.0% 82.5%
1117666 4.1.1.103 beta barrels › SH3 › SH3 › SH3 › SH3_12 0.66 58.0 5.07e-01 100.0% 83.5%
4616207 4.1.1.448 beta barrels › SH3 › SH3 › SH3 › DUF5372 0.66 53.0 5.46e-01 89.1% 98.0%
3260945 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.40e-01 92.7% 91.7%
3511007 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.66 58.0 4.52e-01 100.0% 51.7%
3277860 4.1.1.368 beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.66 57.0 5.42e-01 100.0% 83.1%
3300074 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.66e-01 98.2% 96.3%
4120629 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 57.0 5.22e-01 100.0% 77.3%
3702154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.20e-01 100.0% 76.0%
5026824 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.19e-01 98.2% 75.7%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 58.0 5.48e-01 100.0% 95.4%
4071917 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.65 53.0 5.50e-01 100.0% 100.0%
4206716 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.65 58.0 5.09e-01 100.0% 81.2%
5057134 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.65 56.0 5.02e-01 100.0% 80.0%
3303889 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.65 58.0 5.20e-01 100.0% 73.3%
3768116 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 57.0 3.82e-01 100.0% 29.3%
5034724 4.1.1.482 beta barrels › SH3 › SH3 › SH3 › DUF4314 0.64 51.0 5.18e-01 89.1% 100.0%
3553413 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 57.0 4.93e-01 100.0% 74.1%
3968342 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.64 49.0 5.05e-01 90.9% 86.8%
3858886 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.64 55.0 5.39e-01 100.0% 88.3%
4678658 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.64 57.0 5.02e-01 100.0% 78.8%
4307191 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.64 56.0 4.98e-01 100.0% 78.8%
3421158 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.41e-01 98.2% 90.0%
3676844 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 57.0 5.12e-01 100.0% 73.3%
3979842 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.64 49.0 4.91e-01 90.9% 83.6%
647 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.63 56.0 4.22e-01 100.0% 43.6%
3237640 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.63 57.0 4.50e-01 100.0% 52.7%
3484700 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.63 53.0 4.48e-01 100.0% 62.0%
4284709 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.63 52.0 5.20e-01 94.5% 90.9%
4564636 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.63 55.0 5.03e-01 100.0% 85.1%
3781209 4.1.1.308 beta barrels › SH3 › SH3 › SH3 › PF31073 0.63 56.0 4.57e-01 100.0% 57.0%
3423337 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.63 55.0 4.92e-01 100.0% 68.8%
3824346 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.88e-01 100.0% 68.8%
3818428 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.63 55.0 5.00e-01 100.0% 73.3%
4974065 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.63 52.0 5.09e-01 92.7% 91.7%
3834303 109.4.1.257 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.63 55.0 3.19e-01 98.2% 11.9%
4161673 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.62 54.0 4.72e-01 100.0% 67.1%
3385654 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.18e-01 100.0% 67.5%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.62 53.0 5.28e-01 100.0% 96.6%
4227222 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.62 55.0 5.11e-01 100.0% 91.4%
3368254 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.62 54.0 5.42e-01 98.2% 98.2%
2527304 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.62 53.0 5.20e-01 100.0% 93.4%
4224041 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.62 54.0 4.93e-01 100.0% 82.7%
3329059 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.61 50.0 5.25e-01 92.7% 100.0%
3834390 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 5.24e-01 92.7% 100.0%
3022070 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.61 51.0 4.17e-01 100.0% 71.9%
5000503 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.61 53.0 4.40e-01 100.0% 64.0%
3419491 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 5.03e-01 100.0% 91.7%
4072405 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.60 53.0 4.80e-01 100.0% 81.3%
4186983 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.60 53.0 4.80e-01 100.0% 81.3%
3170404 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.36e-01 100.0% 57.0%
4195627 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.60 51.0 4.84e-01 96.4% 87.7%
5074021 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.59 52.0 4.32e-01 98.2% 73.7%
4206684 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.59 52.0 4.95e-01 100.0% 93.8%
4327595 4.1.1.402 beta barrels › SH3 › SH3 › SH3 › DUF2761 0.59 50.0 4.27e-01 100.0% 64.2%
3717955 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.59 51.0 3.14e-01 100.0% 36.5%
3176333 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.85e-01 100.0% 87.7%
3977126 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.56 42.0 4.29e-01 92.7% 87.3%
3166879 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 47.0 4.54e-01 100.0% 95.4%
4986272 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 38.0 3.89e-01 89.1% 72.7%
3403184 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.55 47.0 3.92e-01 98.2% 89.0%
4002724 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.55 46.0 2.86e-01 98.2% 36.2%
136900 719.2.1.2 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › DUF2442 0.55 45.0 3.97e-01 96.4% 80.0%
3396958 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.54 46.0 3.89e-01 100.0% 91.0%
4537528 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.33e-01 100.0% 95.7%
3343842 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 43.0 2.59e-01 89.1% 37.1%
4399722 1013.1.1.2 beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD40 0.52 36.0 2.16e-01 74.5% 69.1%
3259156 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 42.0 3.36e-01 98.2% 100.0%
None 0.51 42.0 2.67e-01 100.0% 34.0%
4195918 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 42.0 2.79e-01 96.4% 32.2%
4635782 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.51 42.0 3.57e-01 100.0% 72.1%
None 0.51 42.0 2.66e-01 100.0% 33.7%
4033267 4317.1.1.1 a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 0.50 40.0 3.92e-01 92.7% 80.0%
3575278 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.50 42.0 3.05e-01 94.5% 35.5%