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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00138
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00138
Identity
- Kingdom:
- phage
Quality
71.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-48
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k52A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.85 | 74.0 | 6.41e-01 | 100.0% | 64.9% |
| 3psiA06 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.85 | 75.0 | 5.84e-01 | 100.0% | 53.0% |
| 1kl9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.83 | 68.0 | 5.77e-01 | 100.0% | 56.0% |
| 2ahoB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.83 | 74.0 | 6.17e-01 | 100.0% | 61.3% |
| 3go5A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 67.0 | 5.88e-01 | 100.0% | 64.3% |
| 1wi5A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 65.0 | 5.69e-01 | 100.0% | 72.0% |
| 2nn6I02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 65.0 | 4.81e-01 | 100.0% | 48.1% |
| 1luzA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 65.0 | 5.35e-01 | 100.0% | 63.5% |
| 2khiA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 60.0 | 4.94e-01 | 100.0% | 55.8% |
| 2khjA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 57.0 | 4.74e-01 | 100.0% | 58.4% |
| 2otrA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.59 | 43.0 | 3.76e-01 | 89.4% | 92.2% |
| 1u0lA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 47.0 | 4.43e-01 | 100.0% | 73.4% |
| 6wimA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.57 | 44.0 | 3.95e-01 | 93.6% | 98.6% |
| 1gp0A00 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.57 | 49.0 | 3.58e-01 | 100.0% | 66.9% |
| 2v5oA05 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.55 | 46.0 | 3.37e-01 | 100.0% | 65.7% |
ECOD (84)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3744373 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.91 | 83.0 | 4.61e-01 | 100.0% | 9.4% |
| 3485636 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.91 | 80.0 | 6.37e-01 | 100.0% | 51.1% |
| 3733372 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.90 | 81.0 | 6.34e-01 | 100.0% | 54.7% |
| 3899845 | 2.1.1.116 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Spt6_S1 | 0.90 | 82.0 | 6.37e-01 | 100.0% | 57.9% |
| 5024136 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.90 | 80.0 | 5.66e-01 | 100.0% | 35.6% |
| 3530434 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.89 | 81.0 | 5.94e-01 | 100.0% | 47.8% |
| 3740036 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.89 | 80.0 | 6.48e-01 | 100.0% | 61.2% |
| 3277116 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.89 | 80.0 | 6.08e-01 | 100.0% | 44.8% |
| 4017906 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.89 | 79.0 | 6.46e-01 | 100.0% | 63.5% |
| 3309414 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.88 | 79.0 | 6.23e-01 | 100.0% | 54.7% |
| 3446470 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.88 | 79.0 | 5.12e-01 | 100.0% | 26.7% |
| 4582543 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.88 | 80.0 | 6.22e-01 | 100.0% | 49.5% |
| 4987251 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.88 | 74.0 | 6.05e-01 | 100.0% | 51.8% |
| 3309420 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.88 | 79.0 | 6.41e-01 | 100.0% | 61.2% |
| 3698598 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.87 | 79.0 | 6.41e-01 | 100.0% | 63.5% |
| 3930538 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.87 | 78.0 | 6.35e-01 | 100.0% | 61.2% |
| 3839786 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.87 | 78.0 | 6.34e-01 | 100.0% | 60.0% |
| 3592532 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.87 | 79.0 | 6.36e-01 | 100.0% | 63.5% |
| 3785824 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.86 | 77.0 | 6.41e-01 | 100.0% | 65.0% |
| 3485637 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.86 | 77.0 | 6.29e-01 | 100.0% | 64.7% |
| 3740007 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.86 | 77.0 | 6.54e-01 | 100.0% | 69.3% |
| 3413154 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.86 | 76.0 | 6.25e-01 | 100.0% | 60.0% |
| 3648089 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.86 | 77.0 | 5.91e-01 | 95.7% | 64.2% |
| 3633102 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.86 | 76.0 | 6.35e-01 | 100.0% | 65.0% |
| 4946960 | 2.1.1.361 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EIF_2_alpha | 0.86 | 77.0 | 6.38e-01 | 100.0% | 67.5% |
| 3785795 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.86 | 76.0 | 6.37e-01 | 100.0% | 67.5% |
| 4942953 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.86 | 77.0 | 6.02e-01 | 100.0% | 56.8% |
| 4887796 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.86 | 77.0 | 6.09e-01 | 100.0% | 58.1% |
| 3303484 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.86 | 76.0 | 5.59e-01 | 100.0% | 42.5% |
| 4027432 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.85 | 76.0 | 5.64e-01 | 100.0% | 44.3% |
| 4097363 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.85 | 76.0 | 6.07e-01 | 100.0% | 56.7% |
| 3827560 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.85 | 77.0 | 6.00e-01 | 100.0% | 55.8% |
| 3369392 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.85 | 77.0 | 5.90e-01 | 100.0% | 57.0% |
| 5035454 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.85 | 76.0 | 6.47e-01 | 100.0% | 72.0% |
| 4043489 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.85 | 75.0 | 6.02e-01 | 100.0% | 56.7% |
| 3168207 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.85 | 75.0 | 6.14e-01 | 100.0% | 63.5% |
| 3367795 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.85 | 75.0 | 5.92e-01 | 100.0% | 55.8% |
| 4217283 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.84 | 75.0 | 5.91e-01 | 100.0% | 53.7% |
| 4541708 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.84 | 75.0 | 5.57e-01 | 100.0% | 45.2% |
| 4289166 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.84 | 76.0 | 6.43e-01 | 100.0% | 62.7% |
| 3785792 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.84 | 74.0 | 5.77e-01 | 100.0% | 56.0% |
| 3827546 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.84 | 75.0 | 6.09e-01 | 100.0% | 55.3% |
| 3657904 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.84 | 75.0 | 6.72e-01 | 100.0% | 78.5% |
| 3191843 | 2.1.1.219 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 | 0.84 | 74.0 | 5.85e-01 | 100.0% | 64.2% |
| 5030089 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.83 | 74.0 | 6.19e-01 | 100.0% | 67.5% |
| 3899847 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.83 | 74.0 | 5.74e-01 | 100.0% | 52.0% |
| 3989628 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.83 | 74.0 | 5.94e-01 | 100.0% | 57.8% |
| 3661228 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.83 | 72.0 | 5.99e-01 | 100.0% | 63.5% |
| 4092889 | 2.1.1.116 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Spt6_S1 | 0.83 | 72.0 | 5.59e-01 | 100.0% | 52.4% |
| 3691201 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.83 | 72.0 | 5.65e-01 | 100.0% | 52.0% |
| 4828268 | 2.1.1.116 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Spt6_S1 | 0.83 | 72.0 | 5.56e-01 | 100.0% | 50.0% |
| 3387984 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.83 | 74.0 | 6.02e-01 | 100.0% | 55.3% |
| 3252914 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.83 | 73.0 | 6.10e-01 | 100.0% | 66.3% |
| 3168187 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.82 | 72.0 | 5.82e-01 | 100.0% | 57.8% |
| 3721144 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.82 | 72.0 | 4.67e-01 | 100.0% | 25.4% |
| 3785794 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.82 | 72.0 | 5.93e-01 | 100.0% | 58.8% |
| 3986747 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.82 | 71.0 | 5.36e-01 | 100.0% | 45.2% |
| 3514144 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 71.0 | 5.74e-01 | 100.0% | 53.3% |
| 4017907 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 71.0 | 5.50e-01 | 100.0% | 49.5% |
| 4026365 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 72.0 | 5.80e-01 | 100.0% | 56.7% |
| 3195691 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 70.0 | 5.59e-01 | 100.0% | 54.7% |
| 4385597 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.81 | 72.0 | 5.75e-01 | 100.0% | 54.4% |
| 3668585 | 2.1.1.51 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 | 0.80 | 69.0 | 5.62e-01 | 100.0% | 70.0% |
| 3309416 | 2.1.1.233 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RRP5_4th | 0.79 | 69.0 | 5.44e-01 | 100.0% | 55.0% |
| 4453243 | 2.1.1.219 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 | 0.79 | 69.0 | 5.70e-01 | 100.0% | 58.8% |
| 4208811 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.77 | 66.0 | 5.53e-01 | 100.0% | 55.3% |
| 3827541 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.77 | 67.0 | 5.46e-01 | 100.0% | 53.3% |
| 3386655 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 62.0 | 5.76e-01 | 100.0% | 71.7% |
| 4336627 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 65.0 | 5.03e-01 | 100.0% | 44.8% |
| 4031097 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.74 | 65.0 | 5.18e-01 | 100.0% | 50.5% |
| 3173942 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 64.0 | 5.54e-01 | 100.0% | 64.9% |
| 3595432 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 61.0 | 4.92e-01 | 100.0% | 48.9% |
| 4024725 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 60.0 | 5.66e-01 | 100.0% | 76.7% |
| 3768088 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 56.0 | 4.20e-01 | 100.0% | 52.5% |
| 5029892 | 306.4.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 | 0.64 | 41.0 | 3.46e-01 | 93.6% | 36.5% |
| 3580279 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 50.0 | 4.92e-01 | 100.0% | 83.0% |
| 4982571 | 56.2.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT | 0.60 | 47.0 | 4.38e-01 | 85.1% | 98.3% |
| 3573551 | 4.6.1.5 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M | 0.58 | 47.0 | 3.89e-01 | 89.4% | 62.4% |
| 4144572 | 4.6.1.5 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M | 0.57 | 46.0 | 3.78e-01 | 89.4% | 75.3% |
| 4975364 | 56.2.1.0 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT | 0.56 | 45.0 | 4.08e-01 | 89.4% | 93.8% |
| 3890573 | 63.1.1.1 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR | 0.55 | 48.0 | 3.34e-01 | 100.0% | 61.9% |
| 4890675 | 306.4.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 | 0.54 | 38.0 | 3.51e-01 | 95.7% | 54.4% |
| 3413981 | 63.1.1.1 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR | 0.53 | 45.0 | 3.22e-01 | 100.0% | 69.7% |
| 4928227 | 239.2.1.1 ↗ | beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH | 0.52 | 41.0 | 3.60e-01 | 89.4% | 100.0% |