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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00157
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00157
Identity
- Kingdom:
- phage
Quality
85.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-95
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3esiA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.70 | 52.0 | 4.70e-01 | 79.1% | 96.0% |
| 3bnvD00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.68 | 55.0 | 4.74e-01 | 86.8% | 80.4% |
| 3e1eC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.68 | 55.0 | 4.71e-01 | 85.7% | 87.2% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.66 | 41.0 | 4.95e-01 | 89.0% | 96.7% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.65 | 58.0 | 4.92e-01 | 100.0% | 80.7% |
| 3kg6C00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.64 | 52.0 | 3.68e-01 | 86.8% | 45.1% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 41.0 | 4.39e-01 | 76.9% | 75.3% |
| 3fyfA00 | 2.40.128.410 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 55.0 | 4.61e-01 | 94.5% | 82.6% |
| 1fvzA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.62 | 56.0 | 4.03e-01 | 100.0% | 73.2% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 54.0 | 4.54e-01 | 100.0% | 88.9% |
| 4ge1C00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 52.0 | 4.09e-01 | 95.6% | 83.9% |
| 2nykA01 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.60 | 43.0 | 3.65e-01 | 73.6% | 79.1% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 53.0 | 4.53e-01 | 100.0% | 81.7% |
| 5kkuD00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.60 | 45.0 | 3.17e-01 | 79.1% | 97.9% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 52.0 | 4.50e-01 | 94.5% | 76.4% |
| 4h63Q04 | 3.90.1150.120 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.60 | 54.0 | 4.97e-01 | 100.0% | 80.2% |
| 2laeA00 | 3.30.310.170 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC | 0.58 | 50.0 | 4.66e-01 | 97.8% | 74.6% |
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.58 | 49.0 | 4.27e-01 | 93.4% | 78.6% |
| 1w7cA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 43.0 | 4.00e-01 | 81.3% | 87.2% |
| 3pu2B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 50.0 | 4.24e-01 | 98.9% | 73.2% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 48.0 | 3.10e-01 | 96.7% | 46.9% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 40.0 | 4.04e-01 | 90.1% | 75.3% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 50.0 | 4.31e-01 | 98.9% | 72.4% |
| 1vprA03 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 49.0 | 4.11e-01 | 97.8% | 89.2% |
| 3wa2X01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 41.0 | 4.24e-01 | 79.1% | 81.6% |
| 3sxxC01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 40.0 | 3.90e-01 | 75.8% | 84.3% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 45.0 | 3.79e-01 | 89.0% | 98.0% |
| 3w9aA00 | 2.60.120.1160 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 43.0 | 3.19e-01 | 84.6% | 68.8% |
| 3loyA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 3.87e-01 | 76.9% | 90.1% |
| 5z5dA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 42.0 | 3.30e-01 | 84.6% | 71.4% |
| 5c2vB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 45.0 | 3.11e-01 | 96.7% | 38.9% |
| 2eigA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 41.0 | 3.11e-01 | 83.5% | 76.1% |
| 3ebkB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 46.0 | 3.87e-01 | 98.9% | 87.2% |
| 1ksiA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 39.0 | 3.84e-01 | 76.9% | 91.7% |
| 3ly7A01 | 3.40.50.11830 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 47.0 | 3.91e-01 | 100.0% | 59.0% |
| 6grrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 3.73e-01 | 76.9% | 85.1% |
| 3f1sA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 46.0 | 3.85e-01 | 95.6% | 92.0% |
| 2bngC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 45.0 | 3.94e-01 | 97.8% | 77.9% |
| 5t5lA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 41.0 | 3.07e-01 | 84.6% | 76.9% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.70e-01 | 75.8% | 95.6% |
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.51 | 46.0 | 3.60e-01 | 100.0% | 96.3% |
| 1cb8A03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.51 | 42.0 | 3.92e-01 | 89.0% | 82.7% |
| 4jocA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 41.0 | 2.81e-01 | 91.2% | 66.0% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4545623 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.69 | 55.0 | 4.58e-01 | 85.7% | 87.1% |
| 4506585 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.66 | 53.0 | 4.43e-01 | 86.8% | 85.2% |
| 3179848 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.65 | 58.0 | 5.02e-01 | 100.0% | 82.0% |
| 3884581 | 331.3.1.4 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › IP_trans | 0.64 | 57.0 | 4.08e-01 | 98.9% | 91.5% |
| 1170463 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.63 | 41.0 | 4.18e-01 | 76.9% | 67.0% |
| 5040169 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 45.0 | 2.90e-01 | 78.0% | 29.2% |
| 4027918 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.59 | 50.0 | 4.14e-01 | 92.3% | 58.7% |
| 3179489 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.58 | 52.0 | 4.51e-01 | 100.0% | 76.4% |
| 3712989 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.58 | 49.0 | 3.76e-01 | 92.3% | 49.0% |
| 3672663 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.57 | 46.0 | 3.21e-01 | 89.0% | 44.3% |
| 3184366 | 243.5.1.1 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 | 0.57 | 41.0 | 3.74e-01 | 75.8% | 68.8% |
| 4008120 | 5.1.5.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 | 0.56 | 48.0 | 4.37e-01 | 92.3% | 80.0% |
| 3286735 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.56 | 39.0 | 4.01e-01 | 72.5% | 75.3% |
| 3943894 | 77.1.1.7 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 | 0.56 | 48.0 | 4.31e-01 | 92.3% | 77.6% |
| 3737819 | 243.5.1.1 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 | 0.56 | 41.0 | 4.07e-01 | 76.9% | 82.1% |
| 3710799 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 43.0 | 2.80e-01 | 85.7% | 42.0% |
| 4888666 | 243.5.1.4 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AGAO-like_N2 | 0.55 | 41.0 | 4.08e-01 | 79.1% | 74.0% |
| 398615 | 243.5.1.1 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 | 0.55 | 40.0 | 3.91e-01 | 75.8% | 85.1% |
| 3187371 | 243.5.1.1 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 | 0.55 | 41.0 | 3.92e-01 | 78.0% | 81.9% |
| 3223910 | 210.1.2.8 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 | 0.55 | 49.0 | 3.47e-01 | 98.9% | 56.7% |
| 3192395 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.54 | 40.0 | 3.93e-01 | 78.0% | 83.0% |
| 6427 | 243.5.1.1 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 | 0.54 | 40.0 | 3.96e-01 | 78.0% | 92.6% |
| 4016261 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.53 | 47.0 | 3.23e-01 | 100.0% | 86.1% |
| 3430637 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.52 | 43.0 | 3.11e-01 | 95.6% | 45.8% |
| 3682839 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.51 | 43.0 | 3.06e-01 | 95.6% | 44.2% |
| 4424927 | 243.5.1.4 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AGAO-like_N2 | 0.51 | 38.0 | 3.77e-01 | 78.0% | 92.6% |
| 3231010 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 40.0 | 3.39e-01 | 84.6% | 79.4% |
| 3848556 | 5.1.4.417 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › KNTC1_N | 0.51 | 44.0 | 2.95e-01 | 100.0% | 87.6% |
| 3466257 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.51 | 42.0 | 2.93e-01 | 94.5% | 38.6% |
| 3450584 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 41.0 | 2.94e-01 | 93.4% | 38.7% |
| 3441510 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 43.0 | 3.16e-01 | 96.7% | 53.3% |