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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00193
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00193
Identity
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-69
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.78 | 55.0 | 4.81e-01 | 75.4% | 54.1% |
| 4q20A01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.70 | 47.0 | 4.20e-01 | 70.2% | 63.4% |
| 3dd9D02 | 6.10.140.2060 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 45.0 | 4.87e-01 | 71.9% | 100.0% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.66 | 48.0 | 4.27e-01 | 100.0% | 53.5% |
| 3t0yA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.64 | 44.0 | 4.28e-01 | 91.2% | 63.6% |
| 1c1kA02 | 1.10.220.50 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Bacteriophage T4, Gp59, helicase assembly protein, C-terminal domain | 0.64 | 43.0 | 3.51e-01 | 71.9% | 44.3% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 53.0 | 4.32e-01 | 98.2% | 76.4% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 44.0 | 3.94e-01 | 77.2% | 89.2% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 45.0 | 4.33e-01 | 100.0% | 67.2% |
| 1su0B00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.61 | 42.0 | 3.24e-01 | 73.7% | 60.3% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.60 | 41.0 | 3.71e-01 | 71.9% | 54.3% |
| 1nyaA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.60 | 50.0 | 3.68e-01 | 100.0% | 60.2% |
| 2gwlA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.59 | 46.0 | 3.17e-01 | 84.2% | 75.0% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.58 | 42.0 | 3.78e-01 | 80.7% | 55.2% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 41.0 | 3.35e-01 | 93.0% | 41.0% |
| 1hi8A02 | 1.10.490.60 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phage p2 RNA dependent RNA polymerase domain | 0.58 | 46.0 | 3.43e-01 | 87.7% | 44.4% |
| 1fp1D02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 49.0 | 3.31e-01 | 100.0% | 78.7% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.56 | 48.0 | 3.83e-01 | 100.0% | 54.8% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 45.0 | 4.39e-01 | 87.7% | 86.9% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.54 | 46.0 | 3.18e-01 | 100.0% | 81.6% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.54 | 46.0 | 4.11e-01 | 100.0% | 69.0% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.53 | 39.0 | 3.74e-01 | 80.7% | 70.6% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.52 | 45.0 | 3.90e-01 | 100.0% | 69.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3611993 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.85 | 59.0 | 5.47e-01 | 71.9% | 58.6% |
| 3734658 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.72 | 46.0 | 2.71e-01 | 73.7% | 8.3% |
| 4573573 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.72 | 50.0 | 4.34e-01 | 73.7% | 50.0% |
| 4435237 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.72 | 52.0 | 4.28e-01 | 77.2% | 45.7% |
| 3781414 | 3396.1.1.1 ↗ | extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG_1_N | 0.71 | 61.0 | 4.78e-01 | 91.2% | 47.3% |
| 3698083 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.69 | 45.0 | 3.87e-01 | 73.7% | 41.1% |
| 3945393 | 7089.1.1.2 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 | 0.69 | 60.0 | 5.31e-01 | 94.7% | 90.0% |
| 1692482 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.68 | 60.0 | 5.33e-01 | 100.0% | 86.7% |
| 3798232 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.66 | 47.0 | 4.15e-01 | 84.2% | 50.0% |
| 4118286 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.64 | 45.0 | 4.02e-01 | 75.4% | 50.6% |
| 3622936 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.64 | 54.0 | 4.02e-01 | 100.0% | 68.1% |
| 3402206 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.63 | 47.0 | 3.92e-01 | 78.9% | 54.7% |
| 3996406 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.62 | 41.0 | 3.82e-01 | 73.7% | 54.3% |
| 4275352 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.62 | 43.0 | 3.76e-01 | 75.4% | 45.3% |
| 3420431 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.61 | 44.0 | 3.83e-01 | 73.7% | 74.1% |
| 3710423 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 50.0 | 3.91e-01 | 94.7% | 74.4% |
| 5000432 | 101.1.17.1 ↗ | alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e | 0.60 | 51.0 | 4.45e-01 | 100.0% | 61.1% |
| 60261 | 166.1.1.0 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C | 0.59 | 42.0 | 3.58e-01 | 75.4% | 46.3% |
| 3616157 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.59 | 48.0 | 4.16e-01 | 93.0% | 70.5% |
| 3783718 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.59 | 39.0 | 3.74e-01 | 71.9% | 57.1% |
| 3222941 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.58 | 41.0 | 3.00e-01 | 84.2% | 24.3% |
| 3428523 | 185.1.1.5 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Gliadin | 0.58 | 47.0 | 3.85e-01 | 100.0% | 79.2% |
| 2659168 | 625.1.1.1 ↗ | alpha arrays › Hepatitis B viral capsid (hbcag) › Hepatitis B viral capsid (hbcag) › Hepatitis B viral capsid (hbcag) › Hepatitis_core | 0.58 | 43.0 | 3.21e-01 | 82.5% | 44.2% |
| 5039854 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.57 | 39.0 | 3.61e-01 | 70.2% | 93.3% |
| 3811835 | 7076.1.1.0 ↗ | 0.56 | 40.0 | 3.89e-01 | 75.4% | 69.2% | |
| 3616674 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.56 | 42.0 | 3.83e-01 | 94.7% | 60.0% |
| 4981305 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.55 | 41.0 | 3.78e-01 | 84.2% | 60.0% |
| 3594310 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.52 | 43.0 | 3.92e-01 | 100.0% | 66.3% |
| 3576168 | 109.4.1.390 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TH1 | 0.52 | 45.0 | 3.13e-01 | 98.2% | 29.3% |
| 3467408 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 41.0 | 2.70e-01 | 91.2% | 44.2% |
| 2035464 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.51 | 44.0 | 3.62e-01 | 100.0% | 75.5% |
| 3537886 | 109.4.1.1419 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27567 | 0.51 | 46.0 | 2.98e-01 | 100.0% | 43.5% |
| 3900923 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 44.0 | 3.70e-01 | 100.0% | 82.0% |
| 5070891 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 44.0 | 3.98e-01 | 100.0% | 70.0% |