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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00230

Bact-Vir

LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00230

Identity

Kingdom:
phage

Quality

67.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 79-131
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.71 60.0 4.48e-01 100.0% 42.0%
2c1iA02 3.90.640.30 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.60 48.0 4.30e-01 88.7% 68.8%
2vecA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 52.0 4.16e-01 100.0% 76.7%
3prbA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 44.0 3.51e-01 83.0% 87.6%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 48.0 4.08e-01 100.0% 78.9%
4ii2A06 3.10.290.60 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain 0.57 47.0 4.03e-01 100.0% 77.7%
3abzA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 49.0 3.48e-01 100.0% 84.2%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.42e-01 79.2% 77.1%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.56 41.0 3.47e-01 79.2% 94.3%
3kdrA02 3.40.140.120 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › 0.55 41.0 3.24e-01 84.9% 48.0%
2x5jQ01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 46.0 3.28e-01 100.0% 67.4%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 43.0 4.18e-01 100.0% 83.1%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 38.0 2.95e-01 79.2% 77.9%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 3.83e-01 96.2% 73.1%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 46.0 3.75e-01 100.0% 67.9%
7bexA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 3.27e-01 98.1% 72.2%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.53 39.0 2.59e-01 81.1% 54.8%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.44e-01 100.0% 80.9%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.53 45.0 3.89e-01 100.0% 61.5%
5jy6B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 46.0 3.27e-01 100.0% 68.6%
2mlbA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 43.0 3.92e-01 100.0% 72.2%
1d5rA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 3.44e-01 98.1% 47.4%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 45.0 3.68e-01 100.0% 65.7%
2hsiA01 2.60.40.1590 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidoglycan hydrolase domains 0.52 43.0 3.77e-01 92.5% 59.8%
7bi2A02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 45.0 3.42e-01 100.0% 62.9%
2jwpA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 43.0 3.13e-01 100.0% 53.4%
1zczA03 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.52 38.0 2.98e-01 79.2% 33.9%
1z3aA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 38.0 2.84e-01 81.1% 35.9%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.52 40.0 3.28e-01 88.7% 96.4%
2w3jA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 45.0 3.38e-01 100.0% 80.3%
1o91A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.34e-01 100.0% 78.6%
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 45.0 3.87e-01 100.0% 63.1%
2dm2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.52e-01 100.0% 63.6%
5h4cB00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.28e-01 100.0% 79.3%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.51 40.0 3.62e-01 100.0% 80.9%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.51 39.0 3.21e-01 92.5% 82.5%
4tq1A02 3.10.20.620 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 43.0 3.67e-01 100.0% 70.3%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077562 4.1.2.2 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.75 66.0 5.88e-01 100.0% 84.0%
3958320 304.148.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein Rv1825/MT1873 › Uncharacterized protein Rv1825/MT1873 › DUF881 0.69 60.0 4.69e-01 100.0% 48.7%
3942110 4056.1.1.8 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_3 0.68 49.0 3.82e-01 79.2% 71.2%
3516333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 5.22e-01 98.1% 98.2%
3514524 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.62 49.0 3.69e-01 92.5% 80.7%
4966592 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 43.0 4.33e-01 90.6% 72.7%
4975714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.88e-01 94.3% 98.2%
4986938 11.1.4.106 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.60 41.0 3.84e-01 98.1% 55.7%
5016191 11.1.4.106 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.60 42.0 3.93e-01 98.1% 60.0%
3572708 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 42.0 3.35e-01 77.4% 64.3%
3964033 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.58 46.0 4.72e-01 86.8% 98.0%
3249186 221.7.1.3 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.57 50.0 3.93e-01 100.0% 65.2%
3250427 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 42.0 3.37e-01 81.1% 72.7%
3992549 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.56 49.0 3.97e-01 100.0% 74.3%
5036656 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 4.14e-01 88.7% 90.0%
3643001 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.23e-01 83.0% 66.7%
4338732 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 49.0 4.02e-01 100.0% 81.1%
4538814 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 48.0 3.85e-01 100.0% 74.3%
5009284 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.78e-01 100.0% 62.7%
3570843 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 44.0 3.54e-01 92.5% 80.0%
4114062 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 46.0 3.82e-01 100.0% 80.0%
3438809 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.34e-01 100.0% 67.6%
4097532 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 47.0 3.81e-01 100.0% 73.3%
3713551 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 46.0 3.44e-01 100.0% 71.0%
4002416 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.53 41.0 3.03e-01 90.6% 55.0%
3212402 10.32.1.37 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin 0.53 45.0 3.21e-01 100.0% 82.3%
3882496 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.53 45.0 3.69e-01 100.0% 71.4%
5058907 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.60e-01 100.0% 80.0%
4051652 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.52 42.0 3.68e-01 100.0% 83.2%
4584441 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 44.0 3.66e-01 100.0% 76.7%
5034925 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 45.0 3.70e-01 98.1% 69.0%
3572284 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.52 46.0 3.78e-01 100.0% 76.0%
3252848 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.09e-01 83.0% 84.3%
3247603 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.13e-01 100.0% 95.4%
3920281 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.51 43.0 3.28e-01 100.0% 72.1%
3680340 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.51 42.0 3.89e-01 100.0% 73.3%
1873865 216.1.1.6 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UFC1 0.51 42.0 3.10e-01 100.0% 70.7%
3231707 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 42.0 3.32e-01 100.0% 78.4%
3252177 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 2.92e-01 77.4% 64.5%
1759961 11.1.1.354 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Lmo2445-like_C 0.50 43.0 3.75e-01 100.0% 69.0%
3258529 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 43.0 3.57e-01 100.0% 58.0%
4026940 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 42.0 3.06e-01 100.0% 68.5%
4301851 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 40.0 3.15e-01 100.0% 67.9%