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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00255
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00255
Identity
- Kingdom:
- phage
Quality
89.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-44
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.58 | 46.0 | 3.67e-01 | 93.2% | 54.6% |
| 1uhvA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 42.0 | 2.58e-01 | 86.4% | 42.4% |
| 6mfxA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.57 | 40.0 | 2.78e-01 | 72.7% | 45.0% |
| 1mukA02 | 3.90.1850.10 | Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 | 0.57 | 46.0 | 2.67e-01 | 100.0% | 14.9% |
| 3ctkA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.57 | 42.0 | 2.91e-01 | 84.1% | 33.5% |
| 2y3mA02 | 3.30.1370.130 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.54 | 37.0 | 3.44e-01 | 75.0% | 57.1% |
| 2eaqA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 41.0 | 3.44e-01 | 93.2% | 82.0% |
| 4g6tB00 | 6.10.20.120 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.53 | 38.0 | 3.30e-01 | 100.0% | 49.3% |
| 2kyyA00 | 3.30.950.30 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain | 0.52 | 37.0 | 2.73e-01 | 84.1% | 58.2% |
| 3lkbA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 39.0 | 2.82e-01 | 93.2% | 53.3% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.05e-01 | 79.5% | 83.7% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 37.0 | 2.28e-01 | 84.1% | 49.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3790018 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.68 | 45.0 | 2.53e-01 | 70.5% | 7.2% |
| 3989505 | 6051.5.1.0 ↗ | alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain | 0.63 | 43.0 | 4.33e-01 | 75.0% | 84.4% |
| 3173836 | 304.4.1.72 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › PF29523 | 0.61 | 50.0 | 4.27e-01 | 97.7% | 65.0% |
| 2502901 | 207.16.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Trimerization domain of Cubilin N-terminal region › Trimerization domain of Cubilin N-terminal region › PF31269 | 0.57 | 40.0 | 3.36e-01 | 77.3% | 41.0% |
| 3850744 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.55 | 36.0 | 3.13e-01 | 70.5% | 41.4% |
| 3878685 | 2492.1.1.26 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like | 0.55 | 43.0 | 2.98e-01 | 95.5% | 75.7% |
| 3587620 | 304.55.1.22 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobL | 0.54 | 43.0 | 2.84e-01 | 93.2% | 72.4% |
| 4636695 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.54 | 44.0 | 3.92e-01 | 97.7% | 67.6% |
| 4962642 | 304.8.1.123 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › HVO_0513_N | 0.52 | 39.0 | 3.59e-01 | 95.5% | 74.3% |
| 5063713 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 38.0 | 3.61e-01 | 93.2% | 73.3% |
| 3366806 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.51 | 35.0 | 2.26e-01 | 75.0% | 61.2% |
| 3320244 | 53.1.1.4 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › XH | 0.50 | 34.0 | 2.83e-01 | 77.3% | 58.1% |
| 3059312 | 207.1.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 | 0.50 | 40.0 | 2.41e-01 | 100.0% | 22.6% |
| 3713915 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 31.0 | 3.01e-01 | 86.4% | 54.0% |
| 3518266 | 389.1.1.16 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_3 | 0.50 | 34.0 | 3.29e-01 | 77.3% | 60.0% |
| 3261953 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.50 | 37.0 | 2.62e-01 | 93.2% | 41.1% |