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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00258
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00258
Identity
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-63
Domain cluster:
rep: OQ031075.1__WBF69993.1__KPP2018_204__00204__D1-52
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00303.25 best | Thymidylat_synt | 68.6 | 7.00e-19 | 95.1% | 22.3% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3egyX00 | 3.30.572.10 | Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain | 0.87 | 80.0 | 5.23e-01 | 100.0% | 66.7% |
| 1bo7A00 | 3.30.572.10 | Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain | 0.85 | 77.0 | 4.79e-01 | 100.0% | 74.7% |
| 3v8hC00 | 3.30.572.10 | Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain | 0.76 | 66.0 | 4.19e-01 | 95.1% | 78.1% |
| 5ly3A02 | 3.30.420.570 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.55 | 46.0 | 3.26e-01 | 100.0% | 77.2% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.51 | 35.0 | 3.44e-01 | 70.5% | 78.8% |
| 4ha8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 34.0 | 3.39e-01 | 83.6% | 68.3% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4108234 | 266.1.1.1 ↗ | a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt | 0.90 | 82.0 | 5.06e-01 | 100.0% | 75.0% |
| 3961326 | 266.1.1.1 ↗ | a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt | 0.85 | 75.0 | 5.26e-01 | 100.0% | 32.4% |
| 4974926 | 266.1.1.1 ↗ | a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt | 0.76 | 68.0 | 4.61e-01 | 100.0% | 77.2% |
| 5046158 | 266.1.1.1 ↗ | a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt | 0.75 | 67.0 | 4.67e-01 | 100.0% | 33.0% |
| 4003270 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.55 | 38.0 | 2.44e-01 | 72.1% | 29.7% |
| 4937551 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.55 | 43.0 | 3.16e-01 | 93.4% | 48.5% |
| 1720157 | 246.4.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Outer capsid protein VP2 hub domain › Outer capsid protein VP2 hub domain › Orbi_VP2 | 0.53 | 39.0 | 2.96e-01 | 78.7% | 48.4% |
| 3164272 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.53 | 42.0 | 3.32e-01 | 93.4% | 67.3% |
| 4928783 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 29.0 | 2.88e-01 | 73.8% | 49.2% |
| 3938493 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.51 | 34.0 | 3.11e-01 | 70.5% | 82.2% |