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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00265
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00265
Identity
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-70
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 51.0 | 4.01e-01 | 85.7% | 39.6% |
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.65 | 50.0 | 4.58e-01 | 92.1% | 62.8% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 53.0 | 5.43e-01 | 95.2% | 91.9% |
| 5m72A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 46.0 | 3.51e-01 | 92.1% | 31.3% |
| 2kj9A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.64 | 54.0 | 4.51e-01 | 100.0% | 59.3% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.63 | 53.0 | 4.77e-01 | 93.7% | 87.4% |
| 6xssA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 48.0 | 4.71e-01 | 100.0% | 76.8% |
| 3kbtA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 52.0 | 3.43e-01 | 95.2% | 51.1% |
| 3qkyA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 51.0 | 3.48e-01 | 93.7% | 30.3% |
| 2qgmA03 | 1.20.1440.30 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain | 0.62 | 47.0 | 3.84e-01 | 82.5% | 44.0% |
| 1nklA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.62 | 45.0 | 4.26e-01 | 92.1% | 64.1% |
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.62 | 45.0 | 4.14e-01 | 92.1% | 58.0% |
| 2e2eA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 45.0 | 3.45e-01 | 88.9% | 32.5% |
| 2vk9A04 | 1.10.274.80 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.62 | 51.0 | 4.36e-01 | 93.7% | 56.7% |
| 2kj8A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.61 | 51.0 | 4.33e-01 | 100.0% | 57.6% |
| 6wb9201 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 50.0 | 3.32e-01 | 93.7% | 24.2% |
| 1m12A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.61 | 47.0 | 4.34e-01 | 92.1% | 65.5% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.60 | 47.0 | 3.51e-01 | 88.9% | 91.6% |
| 3ccyA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 53.0 | 4.07e-01 | 100.0% | 68.0% |
| 3i5pA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.60 | 43.0 | 4.22e-01 | 100.0% | 68.6% |
| 1zzpA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.60 | 48.0 | 4.09e-01 | 90.5% | 61.5% |
| 2xqyA02 | 1.20.58.1340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 48.0 | 3.84e-01 | 95.2% | 60.1% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.59 | 51.0 | 4.28e-01 | 93.7% | 59.2% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.59 | 43.0 | 3.64e-01 | 92.1% | 43.0% |
| 4aifA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 47.0 | 3.74e-01 | 93.7% | 52.8% |
| 5an3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 49.0 | 3.97e-01 | 96.8% | 72.9% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.59 | 49.0 | 4.18e-01 | 100.0% | 82.3% |
| 2ho1B00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 46.0 | 3.24e-01 | 98.4% | 25.3% |
| 4l9pA00 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.58 | 47.0 | 3.13e-01 | 100.0% | 25.1% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 43.0 | 4.07e-01 | 96.8% | 65.4% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 50.0 | 4.14e-01 | 100.0% | 66.7% |
| 3vhlA02 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.58 | 47.0 | 3.95e-01 | 95.2% | 70.8% |
| 1l9lA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.58 | 44.0 | 4.21e-01 | 92.1% | 73.0% |
| 1bccB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.57 | 48.0 | 3.57e-01 | 100.0% | 81.1% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 47.0 | 4.09e-01 | 95.2% | 87.1% |
| 2gytA01 | 1.10.287.2070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 43.0 | 4.19e-01 | 95.2% | 74.6% |
| 2vqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.56 | 40.0 | 3.11e-01 | 79.4% | 94.6% |
| 6b8hO01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.56 | 45.0 | 3.93e-01 | 88.9% | 98.0% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 43.0 | 4.33e-01 | 93.7% | 90.5% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.55 | 45.0 | 4.14e-01 | 100.0% | 70.2% |
| 1brwA02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.54 | 48.0 | 3.15e-01 | 100.0% | 95.2% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.53 | 43.0 | 3.32e-01 | 92.1% | 78.4% |
| 2c12A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 40.0 | 3.37e-01 | 92.1% | 44.1% |
| 3i1iB01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 45.0 | 2.84e-01 | 100.0% | 36.7% |
| 4mo7A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 43.0 | 3.49e-01 | 100.0% | 70.4% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 41.0 | 3.95e-01 | 92.1% | 77.3% |
| 1bbhA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.51 | 40.0 | 3.31e-01 | 90.5% | 67.2% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3277060 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.74 | 56.0 | 5.27e-01 | 92.1% | 68.0% |
| 3274434 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.72 | 54.0 | 4.95e-01 | 92.1% | 61.2% |
| 3932714 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.70 | 53.0 | 4.78e-01 | 92.1% | 57.8% |
| 3940788 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.70 | 54.0 | 4.53e-01 | 82.5% | 83.8% |
| 3248091 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.69 | 52.0 | 4.78e-01 | 92.1% | 61.2% |
| 3261028 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.68 | 51.0 | 4.69e-01 | 92.1% | 61.2% |
| 5020412 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.67 | 56.0 | 4.79e-01 | 93.7% | 75.2% |
| 3683792 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 51.0 | 4.30e-01 | 98.4% | 48.2% |
| 3319235 | 109.4.1.1282 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 | 0.66 | 58.0 | 3.31e-01 | 100.0% | 15.6% |
| 3935032 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.65 | 53.0 | 4.53e-01 | 90.5% | 85.7% |
| 3719682 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.65 | 56.0 | 4.64e-01 | 100.0% | 90.0% |
| 3777551 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 53.0 | 4.30e-01 | 92.1% | 71.2% |
| 5078844 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.64 | 53.0 | 4.92e-01 | 90.5% | 76.2% |
| 3605793 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.64 | 54.0 | 5.12e-01 | 95.2% | 82.7% |
| 3184592 | 109.4.1.1129 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRAPPC9-Trs120 | 0.63 | 55.0 | 4.57e-01 | 100.0% | 69.6% |
| 3887313 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 52.0 | 4.32e-01 | 95.2% | 80.0% |
| 4032384 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.62 | 51.0 | 4.77e-01 | 93.7% | 86.3% |
| 4543626 | 192.7.1.3 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N | 0.62 | 51.0 | 4.59e-01 | 93.7% | 74.4% |
| 5027357 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.62 | 50.0 | 3.61e-01 | 92.1% | 89.6% |
| 3396075 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.62 | 48.0 | 4.48e-01 | 95.2% | 67.5% |
| 3252439 | 198.1.1.10 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin | 0.61 | 48.0 | 4.50e-01 | 92.1% | 68.8% |
| 3788338 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.61 | 50.0 | 4.79e-01 | 93.7% | 86.5% |
| 3612308 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.59 | 49.0 | 4.12e-01 | 95.2% | 80.5% |
| 3941425 | 109.4.1.697 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Transposase_31 | 0.59 | 48.0 | 3.88e-01 | 100.0% | 44.4% |
| 3580289 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.58 | 48.0 | 3.90e-01 | 95.2% | 75.2% |
| 3293431 | 109.4.1.450 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 | 0.58 | 46.0 | 2.96e-01 | 93.7% | 39.2% |
| 5039404 | 604.2.1.0 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain | 0.57 | 48.0 | 4.66e-01 | 100.0% | 90.7% |
| 4216957 | 3796.1.1.0 ↗ | alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain | 0.56 | 41.0 | 3.02e-01 | 100.0% | 27.8% |
| 3475327 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.56 | 42.0 | 4.01e-01 | 95.2% | 67.5% |
| 3616674 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.55 | 44.0 | 4.11e-01 | 88.9% | 82.5% |
| 3883533 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 49.0 | 3.08e-01 | 100.0% | 24.2% |
| 3886737 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.55 | 42.0 | 3.69e-01 | 98.4% | 54.0% |
| 3411823 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.55 | 43.0 | 3.97e-01 | 95.2% | 65.9% |
| 3242506 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.53 | 45.0 | 3.44e-01 | 100.0% | 39.4% |