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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00282

Bact-Vir

LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00282

Identity

Kingdom:
phage

Quality

90.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-86
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fovA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 41.0 3.75e-01 100.0% 52.9%
6ks6a01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.56 43.0 2.99e-01 85.3% 57.4%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.54 47.0 3.81e-01 98.7% 68.0%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.53 40.0 2.94e-01 80.0% 60.3%
4r0mB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 44.0 2.80e-01 96.0% 61.9%
3iwcB00 3.30.360.110 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain 0.51 29.0 3.19e-01 70.7% 67.2%
3pfeA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 39.0 2.67e-01 82.7% 83.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3021706 309.1.1.0 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.68 50.0 3.93e-01 77.3% 89.3%
4033997 4070.1.1.3 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › DUF3267 0.56 41.0 3.23e-01 77.3% 95.5%
3489670 309.1.1.0 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.56 44.0 3.17e-01 86.7% 72.6%
4028930 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.55 40.0 2.73e-01 77.3% 87.3%
4026859 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 41.0 2.99e-01 82.7% 74.8%
3244833 3914.1.1.2 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.54 44.0 2.62e-01 93.3% 40.6%
3488760 3937.1.1.0 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 0.53 39.0 2.69e-01 78.7% 69.2%
4087557 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.53 39.0 2.61e-01 77.3% 78.6%
3735965 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.53 42.0 3.56e-01 89.3% 69.6%
3816946 3462.1.1.47 ↗ extended segments › V-type proton ATPase subunit G › V-type proton ATPase subunit G › V-type proton ATPase subunit G › PF27048 0.52 33.0 3.23e-01 80.0% 58.7%
3955219 633.23.1.16 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Trp_oprn_chp 0.52 39.0 3.06e-01 81.3% 61.8%
5045508 304.54.1.0 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.51 40.0 3.24e-01 86.7% 93.1%
4250601 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.50 39.0 3.03e-01 85.3% 58.8%
4944813 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.50 35.0 2.66e-01 73.3% 60.5%