←Back to structures
LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00324
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00324
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-156
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10263.16 best | SprT-like | 50.4 | 2.60e-13 | 76.3% | 98.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jixB00 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.74 | 51.0 | 6.01e-01 | 85.1% | 100.0% |
| 3e11A00 | 3.30.2010.20 | Alpha Beta › 2-Layer Sandwich › Zincin-like › | 0.65 | 47.0 | 5.32e-01 | 78.4% | 96.5% |
| 4ka7A01 | 1.10.1370.40 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.63 | 48.0 | 3.47e-01 | 79.1% | 47.6% |
| 4r3vA00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.60 | 48.0 | 4.46e-01 | 82.4% | 69.8% |
| 5givB00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.60 | 49.0 | 3.36e-01 | 86.5% | 39.5% |
| 5e3xA00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.60 | 49.0 | 3.35e-01 | 85.8% | 40.3% |
| 3dwcA00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.59 | 49.0 | 3.34e-01 | 86.5% | 39.5% |
| 4ipeB04 | 1.20.120.790 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Heat shock protein 90, C-terminal domain | 0.56 | 43.0 | 4.61e-01 | 80.4% | 94.4% |
| 2kuiA02 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.54 | 22.0 | 3.24e-01 | 83.8% | 83.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5055672 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.86 | 60.0 | 7.18e-01 | 85.8% | 100.0% |
| 4960523 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.82 | 62.0 | 6.96e-01 | 85.8% | 99.1% |
| 3270701 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.81 | 65.0 | 6.99e-01 | 87.2% | 97.6% |
| 3739141 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.81 | 67.0 | 7.01e-01 | 85.8% | 97.8% |
| 3485197 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.81 | 67.0 | 6.51e-01 | 85.8% | 81.2% |
| 4969797 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.77 | 58.0 | 6.52e-01 | 87.8% | 99.1% |
| 4959203 | 2498.1.1.160 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_MA_2 | 0.66 | 53.0 | 4.49e-01 | 84.5% | 66.8% |
| 5044595 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.63 | 51.0 | 4.76e-01 | 87.8% | 69.4% |
| 3495934 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.63 | 50.0 | 3.64e-01 | 83.1% | 90.7% |
| 3469841 | 2498.1.1.14 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 | 0.61 | 50.0 | 3.57e-01 | 87.2% | 72.1% |
| 3710319 | 2498.1.1.14 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 | 0.61 | 48.0 | 3.85e-01 | 83.8% | 86.4% |
| 4024134 | 2498.1.1.65 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MATCAP | 0.60 | 49.0 | 3.71e-01 | 86.5% | 41.9% |
| 3471065 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.53 | 39.0 | 2.74e-01 | 75.0% | 94.2% |
| 5028020 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.51 | 40.0 | 3.43e-01 | 80.4% | 79.8% |
| 3622091 | 389.1.3.2 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › NCD3G | 0.51 | 24.0 | 3.10e-01 | 74.3% | 82.9% |
| 4847868 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.50 | 17.0 | 2.89e-01 | 72.3% | 88.5% |