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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00331
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00331
Identity
- Kingdom:
- phage
Quality
63.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-93
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.71 | 43.0 | 4.19e-01 | 84.9% | 55.3% |
| 4dwpA02 | 1.10.443.30 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase | 0.57 | 41.0 | 3.18e-01 | 80.6% | 31.7% |
| 2oarB00 | 1.10.1200.120 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 | 0.57 | 38.0 | 3.43e-01 | 80.6% | 51.2% |
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 38.0 | 3.62e-01 | 72.0% | 93.5% |
| 1vwxk00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.54 | 34.0 | 3.80e-01 | 77.4% | 85.5% |
| 1gep001 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.54 | 38.0 | 3.10e-01 | 74.2% | 39.1% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.50 | 35.0 | 3.67e-01 | 73.1% | 95.5% |
| 3p9xA00 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.50 | 37.0 | 2.89e-01 | 77.4% | 42.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954510 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 44.0 | 4.11e-01 | 78.5% | 55.7% |
| 3404845 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.63 | 43.0 | 4.35e-01 | 88.2% | 69.5% |
| 3270877 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.61 | 47.0 | 4.15e-01 | 89.2% | 55.0% |
| 3565424 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.61 | 48.0 | 4.33e-01 | 87.1% | 61.6% |
| 3562988 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.61 | 48.0 | 4.20e-01 | 87.1% | 57.0% |
| 4984268 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.61 | 42.0 | 4.13e-01 | 80.6% | 66.0% |
| 4638994 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.59 | 42.0 | 3.92e-01 | 78.5% | 60.0% |
| 3900116 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.58 | 37.0 | 3.52e-01 | 83.9% | 51.3% |
| 3713382 | 220.1.1.19 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle | 0.56 | 38.0 | 3.74e-01 | 77.4% | 62.9% |
| 5038180 | 3016.1.1.3 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_5 | 0.56 | 40.0 | 3.68e-01 | 74.2% | 95.0% |
| 1117773 | 1.1.13.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DTP-pb9_A-dom_C,DTP-pb9_A-dom_N | 0.56 | 26.0 | 3.12e-01 | 84.9% | 64.2% |
| 3895772 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.55 | 40.0 | 3.77e-01 | 76.3% | 70.4% |
| 3638371 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 48.0 | 3.59e-01 | 98.9% | 77.8% |
| 3588318 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.53 | 39.0 | 3.09e-01 | 77.4% | 42.6% |
| 4990636 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 43.0 | 3.78e-01 | 84.9% | 66.2% |
| 4929294 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.53 | 43.0 | 3.45e-01 | 87.1% | 45.6% |
| 4188369 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.53 | 39.0 | 2.93e-01 | 77.4% | 36.8% |
| 3571085 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 41.0 | 3.76e-01 | 86.0% | 64.0% |
| 3425526 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.52 | 42.0 | 3.36e-01 | 88.2% | 76.0% |
| 3585374 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 41.0 | 3.68e-01 | 86.0% | 86.7% |
| 3537236 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 40.0 | 3.60e-01 | 84.9% | 91.5% |
| 4983447 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.51 | 42.0 | 3.06e-01 | 91.4% | 45.3% |
| 3297150 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 36.0 | 3.60e-01 | 79.6% | 70.0% |
| 4644171 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.50 | 37.0 | 2.89e-01 | 77.4% | 40.5% |
D2
medium
residues 94-167