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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00334
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00334
Identity
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-61
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.72 | 38.0 | 3.91e-01 | 95.0% | 52.6% |
| 5chtB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.72 | 52.0 | 3.33e-01 | 78.3% | 21.0% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.70 | 51.0 | 3.26e-01 | 78.3% | 17.9% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 50.0 | 4.90e-01 | 80.0% | 96.9% |
| 5lznA00 | 3.10.20.360 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain | 0.66 | 48.0 | 3.90e-01 | 76.7% | 62.2% |
| 6vlfA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 44.0 | 4.50e-01 | 76.7% | 98.3% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.60 | 32.0 | 3.30e-01 | 98.3% | 52.6% |
| 6lf2B01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.60 | 42.0 | 3.41e-01 | 75.0% | 98.4% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 41.0 | 3.62e-01 | 73.3% | 100.0% |
| 5yprA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 48.0 | 4.34e-01 | 90.0% | 92.8% |
| 1lmlA04 | 2.30.34.10 | Mainly Beta › Roll › Leishmanolysin; domain 4 › Leishmanolysin domain 4 | 0.59 | 40.0 | 3.48e-01 | 73.3% | 74.7% |
| 2rrfA00 | 2.30.29.160 | Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal | 0.58 | 42.0 | 3.31e-01 | 80.0% | 69.5% |
| 7t8tA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 41.0 | 3.25e-01 | 75.0% | 76.3% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.57 | 41.0 | 2.95e-01 | 78.3% | 30.4% |
| 1wxcB01 | 3.30.1880.10 | Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like | 0.55 | 37.0 | 3.73e-01 | 71.7% | 91.9% |
| 4govA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 39.0 | 3.19e-01 | 80.0% | 95.4% |
| 1ki1B02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 44.0 | 3.44e-01 | 93.3% | 90.8% |
| 3c9hA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 38.0 | 3.00e-01 | 78.3% | 76.6% |
| 4jonC00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 42.0 | 3.38e-01 | 86.7% | 83.9% |
| 2b5eA03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 40.0 | 3.21e-01 | 86.7% | 78.0% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 34.0 | 2.96e-01 | 70.0% | 76.8% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 35.0 | 2.94e-01 | 75.0% | 86.0% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5024226 | 375.1.1.83 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB | 0.75 | 38.0 | 4.26e-01 | 96.7% | 62.2% |
| 3660442 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.73 | 53.0 | 3.35e-01 | 78.3% | 17.1% |
| 4995678 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 47.0 | 4.90e-01 | 80.0% | 94.5% |
| 3835664 | 6.1.1.25 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 | 0.64 | 46.0 | 3.54e-01 | 78.3% | 97.3% |
| 3614493 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 44.0 | 2.84e-01 | 76.7% | 77.0% |
| 4026805 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.62 | 47.0 | 3.43e-01 | 83.3% | 72.9% |
| 5025277 | 284.1.1.13 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP-like_N | 0.62 | 49.0 | 5.04e-01 | 86.7% | 98.2% |
| 3805986 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.60 | 41.0 | 2.56e-01 | 71.7% | 30.4% |
| 4420340 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 47.0 | 4.80e-01 | 90.0% | 98.3% |
| 3712663 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.60 | 42.0 | 3.72e-01 | 76.7% | 71.6% |
| 4385467 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.59 | 39.0 | 3.34e-01 | 70.0% | 50.0% |
| 5023740 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 42.0 | 4.49e-01 | 83.3% | 94.0% |
| 3598462 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 41.0 | 3.36e-01 | 76.7% | 71.2% |
| 3433661 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.58 | 36.0 | 4.26e-01 | 81.7% | 95.0% |
| 3365104 | 4.1.1.118 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_15 | 0.58 | 40.0 | 3.95e-01 | 73.3% | 93.8% |
| 5002449 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 42.0 | 4.40e-01 | 85.0% | 89.1% |
| 3679595 | 4.1.1.118 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_15 | 0.57 | 44.0 | 4.11e-01 | 83.3% | 82.4% |
| 3328202 | 6.1.1.25 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 | 0.57 | 47.0 | 3.58e-01 | 100.0% | 93.5% |
| 3432877 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 43.0 | 4.22e-01 | 83.3% | 95.4% |
| 3245157 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.57 | 48.0 | 3.51e-01 | 100.0% | 59.5% |
| 5066141 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.57 | 39.0 | 3.84e-01 | 73.3% | 67.7% |
| 4930465 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.56 | 39.0 | 3.97e-01 | 75.0% | 81.7% |
| 175113 | 2.1.1.28 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C | 0.55 | 42.0 | 3.32e-01 | 90.0% | 82.2% |
| 4936051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 40.0 | 4.11e-01 | 80.0% | 100.0% |
| 3376913 | 2.1.1.28 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C | 0.54 | 41.0 | 3.54e-01 | 90.0% | 79.1% |
| 5035742 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 39.0 | 3.92e-01 | 80.0% | 90.0% |
| 4937757 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.53 | 35.0 | 2.59e-01 | 70.0% | 58.8% |
| None | — | 0.53 | 41.0 | 2.58e-01 | 90.0% | 38.4% | |
| 3233486 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.52 | 36.0 | 2.91e-01 | 76.7% | 42.2% |
| 3654725 | 6.1.1.25 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 | 0.51 | 40.0 | 3.32e-01 | 95.0% | 96.9% |
D2
high
residues 66-161
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 36.0 | 4.51e-01 | 79.2% | 100.0% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 43.0 | 3.83e-01 | 72.9% | 83.9% |
| 5tf2A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 43.0 | 3.03e-01 | 80.2% | 86.7% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 33.0 | 3.91e-01 | 75.0% | 85.7% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 40.0 | 4.46e-01 | 96.9% | 95.9% |
| 3d5pA00 | 3.40.1580.10 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like | 0.56 | 41.0 | 3.75e-01 | 78.1% | 86.5% |
| 3hjhA02 | 3.30.2060.10 | Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain | 0.56 | 41.0 | 4.35e-01 | 80.2% | 100.0% |
| 6yleA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 42.0 | 2.83e-01 | 81.2% | 88.5% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 3.01e-01 | 94.8% | 100.0% |
| 1kb0A01 | 2.140.10.10 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily | 0.50 | 42.0 | 2.63e-01 | 93.8% | 89.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3784334 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.60 | 38.0 | 4.46e-01 | 100.0% | 100.0% |
| 3914746 | 4.1.1.128 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_4 | 0.59 | 37.0 | 4.28e-01 | 75.0% | 88.6% |
| 4342488 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 37.0 | 4.40e-01 | 82.3% | 98.4% |
| 4424372 | 2004.1.1.554 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter | 0.57 | 49.0 | 3.34e-01 | 99.0% | 39.2% |
| 5001934 | 2004.1.1.554 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter | 0.56 | 48.0 | 3.24e-01 | 99.0% | 40.7% |
| 3965920 | 506.2.1.2 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter | 0.56 | 43.0 | 4.47e-01 | 84.4% | 100.0% |
| 4957350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 37.0 | 4.24e-01 | 78.1% | 98.5% |
| 3392883 | 5.1.4.417 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › KNTC1_N | 0.55 | 38.0 | 2.64e-01 | 72.9% | 81.8% |
| None | — | 0.55 | 47.0 | 3.09e-01 | 99.0% | 36.3% | |
| 4524863 | 506.2.1.2 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter | 0.55 | 44.0 | 4.43e-01 | 88.5% | 100.0% |
| 3993651 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 42.0 | 3.11e-01 | 84.4% | 90.7% |
| 4035868 | 2003.1.2.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox | 0.54 | 37.0 | 3.38e-01 | 70.8% | 97.7% |
| 3333684 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 22.0 | 2.65e-01 | 100.0% | 53.8% |
| 5028935 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 35.0 | 4.06e-01 | 81.2% | 97.1% |