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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00338
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00338
Identity
- Kingdom:
- phage
Quality
81.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-109
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tf8B00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.53 | 40.0 | 3.32e-01 | 82.0% | 81.5% |
| 2wzpR02 | 3.55.50.50 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Phage tail base-plate attachment protein, domain D4 | 0.50 | 36.0 | 3.70e-01 | 76.0% | 77.8% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3957089 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 24.0 | 2.86e-01 | 80.0% | 47.1% |
| 3923319 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.58 | 50.0 | 3.90e-01 | 100.0% | 82.6% |
| 3169095 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.56 | 23.0 | 2.48e-01 | 85.0% | 41.2% |
| 4024062 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 24.0 | 2.76e-01 | 84.0% | 48.6% |
| 4197190 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.54 | 26.0 | 3.10e-01 | 79.0% | 66.7% |
| 3489010 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 27.0 | 2.52e-01 | 85.0% | 34.4% |
| 3225904 | 7084.1.1.1 ↗ | few secondary structure elements › Highly disulfide-linked beta sandwich region of p43 › Highly disulfide-linked beta sandwich region of p43 › Highly disulfide-linked beta sandwich region of p43 › PF28734 | 0.53 | 31.0 | 3.17e-01 | 81.0% | 58.9% |
| 3189438 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.52 | 40.0 | 2.85e-01 | 85.0% | 97.1% |
| 5052173 | 361.1.1.0 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain | 0.52 | 26.0 | 2.90e-01 | 96.0% | 60.0% |