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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00399
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00399
Identity
- Kingdom:
- phage
Quality
87.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-58
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.73 | 65.0 | 5.64e-01 | 100.0% | 71.3% |
| 8b6zA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.73 | 64.0 | 5.73e-01 | 100.0% | 81.7% |
| 3mcaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.73 | 64.0 | 5.08e-01 | 100.0% | 57.6% |
| 1zunB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.71 | 63.0 | 5.42e-01 | 100.0% | 73.3% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.68 | 51.0 | 4.67e-01 | 80.7% | 97.3% |
| 3qtgA02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.68 | 59.0 | 5.06e-01 | 100.0% | 72.3% |
| 3gg8C03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.68 | 60.0 | 5.02e-01 | 100.0% | 72.2% |
| 8eq1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.66 | 57.0 | 5.00e-01 | 98.2% | 77.3% |
| 3t05A02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.66 | 58.0 | 4.91e-01 | 100.0% | 73.2% |
| 7r6yA01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.66 | 57.0 | 4.92e-01 | 98.2% | 76.1% |
| 1yvuA02 | 2.30.340.10 | Mainly Beta › Roll › PAZ domain fold › PAZ domain superfamily | 0.66 | 53.0 | 4.53e-01 | 89.5% | 95.7% |
| 7oo1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.66 | 57.0 | 5.19e-01 | 98.2% | 87.0% |
| 6su1D01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.65 | 57.0 | 4.93e-01 | 98.2% | 78.9% |
| 1a3wB03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.64 | 55.0 | 4.71e-01 | 100.0% | 73.2% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 52.0 | 4.89e-01 | 91.2% | 95.7% |
| 4ac9C04 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.61 | 52.0 | 4.73e-01 | 100.0% | 73.8% |
| 4ga6A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.58 | 50.0 | 4.51e-01 | 100.0% | 89.2% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 44.0 | 3.67e-01 | 87.7% | 58.8% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 46.0 | 4.14e-01 | 100.0% | 77.2% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 47.0 | 4.05e-01 | 100.0% | 71.8% |
| 2napA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.57 | 46.0 | 3.84e-01 | 98.2% | 96.5% |
| 3mi6B03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 48.0 | 3.99e-01 | 96.5% | 92.3% |
| 2d44A01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 41.0 | 2.57e-01 | 78.9% | 16.6% |
| 1h0hA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.56 | 45.0 | 3.31e-01 | 94.7% | 72.7% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.55 | 39.0 | 3.76e-01 | 77.2% | 72.7% |
| 3n6rA03 | 3.30.700.30 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.55 | 44.0 | 3.59e-01 | 100.0% | 84.2% |
| 1bliA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 45.0 | 4.02e-01 | 96.5% | 94.3% |
| 1ti2A04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.54 | 45.0 | 3.44e-01 | 100.0% | 61.9% |
| 3fanA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 38.0 | 3.62e-01 | 84.2% | 61.6% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 39.0 | 3.21e-01 | 86.0% | 98.4% |
| 1qyaB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 36.0 | 2.84e-01 | 78.9% | 33.3% |
| 5aq0B00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.50 | 39.0 | 3.59e-01 | 100.0% | 63.4% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027218 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.82 | 76.0 | 6.71e-01 | 100.0% | 73.8% |
| 3782195 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.82 | 76.0 | 6.53e-01 | 100.0% | 75.3% |
| 3712506 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.82 | 75.0 | 6.47e-01 | 100.0% | 72.9% |
| 3969204 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.82 | 75.0 | 6.78e-01 | 100.0% | 76.0% |
| 3781314 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.81 | 75.0 | 6.32e-01 | 100.0% | 76.7% |
| 3177070 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.81 | 75.0 | 6.59e-01 | 100.0% | 81.2% |
| 3739976 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.79 | 73.0 | 6.31e-01 | 100.0% | 75.3% |
| 3944437 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.79 | 72.0 | 6.37e-01 | 100.0% | 77.5% |
| 3172227 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.76 | 68.0 | 5.75e-01 | 100.0% | 75.8% |
| 5079674 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.73 | 65.0 | 5.94e-01 | 100.0% | 76.0% |
| 5035934 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.73 | 60.0 | 5.78e-01 | 91.2% | 95.4% |
| 143 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.71 | 63.0 | 5.38e-01 | 100.0% | 71.7% |
| 3976834 | 4.1.1.156 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2158 | 0.70 | 53.0 | 5.62e-01 | 82.5% | 100.0% |
| 4305196 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.70 | 54.0 | 5.77e-01 | 87.7% | 96.0% |
| 3945489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 52.0 | 5.44e-01 | 80.7% | 100.0% |
| 1516038 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.68 | 59.0 | 5.06e-01 | 100.0% | 72.3% |
| 4994399 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.68 | 58.0 | 5.00e-01 | 100.0% | 74.7% |
| 4311355 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.68 | 59.0 | 4.96e-01 | 100.0% | 76.0% |
| 3415703 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.67 | 59.0 | 5.04e-01 | 100.0% | 75.8% |
| 3880866 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.67 | 60.0 | 4.89e-01 | 100.0% | 68.6% |
| 3264806 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 54.0 | 5.67e-01 | 87.7% | 100.0% |
| 5057245 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.67 | 58.0 | 5.05e-01 | 100.0% | 71.1% |
| 1515984 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.67 | 58.0 | 4.90e-01 | 100.0% | 73.0% |
| 3596767 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.67 | 58.0 | 4.88e-01 | 100.0% | 73.0% |
| 3481480 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.66 | 58.0 | 4.88e-01 | 100.0% | 75.0% |
| 4379635 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.66 | 58.0 | 4.94e-01 | 100.0% | 73.7% |
| 4116754 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.66 | 48.0 | 5.14e-01 | 78.9% | 100.0% |
| 4984743 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.66 | 57.0 | 4.89e-01 | 100.0% | 73.7% |
| 4068826 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.66 | 56.0 | 4.91e-01 | 100.0% | 73.3% |
| 4251719 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.65 | 57.0 | 4.84e-01 | 100.0% | 73.7% |
| 4056457 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.65 | 56.0 | 4.42e-01 | 100.0% | 54.4% |
| 4235076 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.65 | 56.0 | 5.05e-01 | 100.0% | 70.0% |
| 5050004 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.64 | 56.0 | 4.86e-01 | 100.0% | 76.7% |
| 5072694 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.64 | 54.0 | 4.86e-01 | 100.0% | 75.3% |
| 4037435 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.63 | 49.0 | 4.65e-01 | 86.0% | 85.7% |
| 4927153 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.62 | 43.0 | 4.46e-01 | 73.7% | 80.0% |
| 5015359 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.62 | 53.0 | 4.73e-01 | 100.0% | 69.4% |
| 4991056 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.62 | 44.0 | 4.52e-01 | 75.4% | 81.8% |
| 5069323 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 43.0 | 4.53e-01 | 75.4% | 90.0% |
| 5055583 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.59 | 48.0 | 4.34e-01 | 96.5% | 97.6% |
| 3368703 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 43.0 | 3.91e-01 | 96.5% | 65.0% |
| 3516960 | 12.1.1.25 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C | 0.53 | 45.0 | 3.74e-01 | 100.0% | 52.7% |
| 3883683 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 3.70e-01 | 96.5% | 71.0% |
| 5058989 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.52 | 41.0 | 3.55e-01 | 98.2% | 53.7% |
| 3317825 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.52 | 44.0 | 3.95e-01 | 100.0% | 68.8% |
| 4172290 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.51 | 37.0 | 2.97e-01 | 80.7% | 76.2% |
| None | — | 0.50 | 39.0 | 3.62e-01 | 100.0% | 65.0% | |
| 3891345 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.50 | 39.0 | 3.37e-01 | 100.0% | 52.0% |