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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00410
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00410
Identity
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-99
Domain cluster:
rep: Mad1_20_16_scaffold_0_curated_closed_complete_start-adj_prodigal-single.1__X__X__00739__D14-94
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oarB00 | 1.10.1200.120 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 | 0.70 | 35.0 | 3.10e-01 | 74.2% | 33.6% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.54 | 45.0 | 2.72e-01 | 92.1% | 87.8% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.50 | 35.0 | 2.84e-01 | 70.8% | 90.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3517620 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.64 | 39.0 | 2.67e-01 | 86.5% | 16.9% |
| 4564040 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.60 | 41.0 | 3.61e-01 | 98.9% | 46.7% |
| 3734132 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.60 | 41.0 | 2.82e-01 | 70.8% | 46.7% |
| 4026519 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.59 | 41.0 | 3.56e-01 | 71.9% | 88.1% |
| 4458171 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.56 | 38.0 | 3.39e-01 | 91.0% | 47.7% |
| 4025072 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.55 | 38.0 | 3.54e-01 | 95.5% | 55.7% |
| None | — | 0.52 | 43.0 | 3.35e-01 | 94.4% | 68.8% | |
| 4929746 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.52 | 37.0 | 3.24e-01 | 100.0% | 46.3% |
D2
medium
residues 120-205
Domain cluster:
rep: SRR1747052_scaffold_2_prodigal-single.1__X__X__00337__D104-185