←Back to structures
LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00423
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00423
Identity
- Kingdom:
- phage
Quality
85.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-128
Domain cluster:
rep: BML_08182015_6_5m_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00221__D6-88
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d0qA00 | 3.90.580.10 | Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain | 0.68 | 46.0 | 4.85e-01 | 74.8% | 77.5% |
| 7k0yA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.55 | 45.0 | 2.99e-01 | 87.8% | 27.3% |
| 4omfB02 | 3.10.450.750 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 24.0 | 3.34e-01 | 79.1% | 100.0% |
| 3etvA02 | 1.20.58.2230 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Retrograde transport protein Dsl1, N-terminal domain | 0.52 | 42.0 | 3.41e-01 | 88.7% | 77.5% |
| 7sz2A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 34.0 | 3.80e-01 | 74.8% | 84.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4023805 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 51.0 | 5.93e-01 | 73.9% | 95.3% |
| 4680318 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.69 | 47.0 | 5.27e-01 | 75.7% | 88.9% |
| 8015 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.68 | 46.0 | 4.85e-01 | 74.8% | 77.5% |
| 4539347 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.68 | 46.0 | 4.87e-01 | 73.9% | 79.0% |
| 4995759 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 46.0 | 5.34e-01 | 76.5% | 100.0% |
| 3772921 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 49.0 | 5.27e-01 | 93.9% | 89.0% |
| 4166935 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.64 | 43.0 | 4.55e-01 | 72.2% | 78.0% |
| 3241448 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 44.0 | 4.55e-01 | 82.6% | 91.8% |
| 3700803 | 316.1.1.30 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PAP_NTPase | 0.56 | 39.0 | 3.43e-01 | 94.8% | 48.0% |
| 4937620 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.52 | 30.0 | 3.53e-01 | 94.8% | 88.6% |
| 3617714 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.51 | 31.0 | 3.74e-01 | 72.2% | 93.3% |
| 4226766 | 3894.1.1.3 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M | 0.51 | 37.0 | 3.62e-01 | 100.0% | 68.5% |