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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00444
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00444
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-103
Domain cluster:
rep: LacPavin_0818_WC45_scaffold_160996_curated_closed_complete_prodigal-single.1__X__X__00528__D37-113
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.68 | 48.0 | 5.08e-01 | 86.8% | 86.2% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.67 | 49.0 | 5.28e-01 | 85.5% | 93.8% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 46.0 | 3.74e-01 | 73.7% | 42.6% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.65 | 46.0 | 5.13e-01 | 85.5% | 100.0% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.64 | 53.0 | 4.04e-01 | 93.4% | 50.8% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 46.0 | 5.13e-01 | 97.4% | 96.6% |
| 2rqrA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 47.0 | 4.00e-01 | 98.7% | 49.6% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.63 | 55.0 | 3.84e-01 | 100.0% | 92.8% |
| 6pfzD02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.63 | 53.0 | 3.67e-01 | 93.4% | 38.1% |
| 3cgbA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.61 | 49.0 | 4.38e-01 | 88.2% | 84.5% |
| 3ejvA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 42.0 | 3.38e-01 | 72.4% | 44.7% |
| 1nhpA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.61 | 49.0 | 4.33e-01 | 89.5% | 85.0% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.61 | 53.0 | 3.82e-01 | 100.0% | 87.2% |
| 2qrdA00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.60 | 48.0 | 4.20e-01 | 88.2% | 89.5% |
| 3q34A00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.59 | 49.0 | 3.95e-01 | 100.0% | 97.7% |
| 1qlmA02 | 3.30.1030.10 | Alpha Beta › 2-Layer Sandwich › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 | 0.59 | 45.0 | 3.44e-01 | 86.8% | 75.3% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.58 | 50.0 | 3.62e-01 | 100.0% | 87.5% |
| 3icsA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 47.0 | 3.29e-01 | 90.8% | 37.2% |
| 1yqzA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.58 | 46.0 | 4.13e-01 | 88.2% | 86.1% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.57 | 45.0 | 4.07e-01 | 89.5% | 82.3% |
| 2wjqA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.57 | 44.0 | 3.22e-01 | 81.6% | 50.7% |
| 3n72A00 | 3.15.10.20 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain | 0.57 | 46.0 | 3.85e-01 | 92.1% | 86.0% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.57 | 50.0 | 4.37e-01 | 98.7% | 83.8% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 48.0 | 3.79e-01 | 100.0% | 92.1% |
| 4ep4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 42.0 | 3.35e-01 | 81.6% | 95.8% |
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 47.0 | 4.08e-01 | 93.4% | 65.2% |
| 7k98B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 33.0 | 2.90e-01 | 84.2% | 38.6% |
| 2vijA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.53 | 44.0 | 3.66e-01 | 98.7% | 51.9% |
| 3ub1D02 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 3.91e-01 | 94.7% | 85.1% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.53 | 45.0 | 3.81e-01 | 98.7% | 83.1% |
| 4ibnA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 44.0 | 3.41e-01 | 100.0% | 77.1% |
| 2rkcA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 45.0 | 2.79e-01 | 94.7% | 85.0% |
| 4frxA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.51 | 45.0 | 2.86e-01 | 100.0% | 99.5% |
| 3qooA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 41.0 | 3.50e-01 | 92.1% | 85.8% |
| 3ozqA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.51 | 43.0 | 3.43e-01 | 98.7% | 55.8% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.50 | 43.0 | 3.37e-01 | 100.0% | 94.4% |
| 3k67A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 41.0 | 3.36e-01 | 93.4% | 78.2% |
| 2pmqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 43.0 | 3.66e-01 | 97.4% | 99.2% |
| 4w78F00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 40.0 | 3.48e-01 | 92.1% | 100.0% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3227607 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.68 | 57.0 | 3.74e-01 | 89.5% | 77.6% |
| 4460236 | 2484.1.1.232 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › EutA | 0.66 | 49.0 | 3.83e-01 | 77.6% | 87.7% |
| 4417262 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.65 | 58.0 | 4.51e-01 | 100.0% | 98.8% |
| 3888419 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.65 | 57.0 | 3.82e-01 | 94.7% | 92.0% |
| 4963188 | 212.1.1.9 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair | 0.65 | 54.0 | 4.60e-01 | 93.4% | 96.1% |
| 4205852 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.65 | 56.0 | 3.95e-01 | 100.0% | 87.8% |
| 3495055 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.64 | 57.0 | 3.91e-01 | 100.0% | 90.4% |
| 4647627 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.64 | 53.0 | 3.90e-01 | 93.4% | 47.0% |
| 3225768 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.64 | 57.0 | 4.41e-01 | 100.0% | 81.8% |
| 3836393 | 9.2.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg | 0.63 | 56.0 | 4.17e-01 | 100.0% | 91.4% |
| 2373 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.62 | 55.0 | 3.78e-01 | 100.0% | 90.3% |
| 3952986 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.61 | 53.0 | 4.65e-01 | 100.0% | 97.5% |
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 33.0 | 2.98e-01 | 71.1% | 35.5% |
| 5036729 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.60 | 51.0 | 4.46e-01 | 100.0% | 60.8% |
| 3931418 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 42.0 | 4.67e-01 | 97.4% | 93.3% |
| 3796890 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.60 | 53.0 | 3.83e-01 | 100.0% | 95.6% |
| 3711638 | 883.1.1.6 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N | 0.59 | 47.0 | 3.90e-01 | 90.8% | 86.0% |
| 5035282 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.59 | 51.0 | 4.42e-01 | 100.0% | 64.8% |
| 3633294 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.59 | 52.0 | 4.30e-01 | 100.0% | 54.3% |
| 3967619 | 244.3.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD | 0.59 | 46.0 | 3.99e-01 | 85.5% | 99.2% |
| 3196369 | 231.1.2.2 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › Peptidase_S58 | 0.58 | 49.0 | 3.23e-01 | 100.0% | 46.6% |
| 3510355 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.58 | 50.0 | 4.30e-01 | 94.7% | 83.3% |
| 3808601 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 53.0 | 5.09e-01 | 100.0% | 90.6% |
| 4575250 | 331.3.1.40 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 | 0.57 | 49.0 | 3.68e-01 | 93.4% | 75.1% |
| 3466796 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.57 | 45.0 | 3.47e-01 | 85.5% | 57.1% |
| 4520424 | 212.1.1.17 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_IV | 0.57 | 46.0 | 3.94e-01 | 93.4% | 83.7% |
| 3225074 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.57 | 47.0 | 4.18e-01 | 92.1% | 97.3% |
| 2780879 | 1172.1.1.1 ↗ | beta barrels › UL131A-like › UL130 C-terminal domain › UL130 C-terminal domain › Gp_UL130 | 0.57 | 41.0 | 3.66e-01 | 77.6% | 55.0% |
| 4386718 | 212.1.1.17 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_IV | 0.57 | 46.0 | 3.96e-01 | 93.4% | 91.5% |
| 4029236 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.56 | 45.0 | 3.61e-01 | 90.8% | 93.9% |
| 3973881 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.56 | 49.0 | 4.05e-01 | 97.4% | 73.6% |
| 5051927 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 48.0 | 4.16e-01 | 97.4% | 80.0% |
| 5000523 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.56 | 49.0 | 4.23e-01 | 100.0% | 62.5% |
| 3467280 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 43.0 | 2.62e-01 | 88.2% | 86.3% |
| 4349091 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.54 | 40.0 | 2.55e-01 | 80.3% | 32.7% |
| 4958380 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.54 | 42.0 | 2.88e-01 | 85.5% | 74.3% |
| 4976957 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.54 | 39.0 | 2.94e-01 | 80.3% | 30.6% |
| 3611989 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 50.0 | 3.88e-01 | 100.0% | 56.0% |
| 4021847 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.53 | 40.0 | 2.75e-01 | 82.9% | 34.7% |
| 5030508 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.53 | 46.0 | 3.48e-01 | 97.4% | 50.8% |
| 3579353 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 42.0 | 3.56e-01 | 84.2% | 67.5% |
| 4974772 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 41.0 | 3.14e-01 | 88.2% | 99.0% |
| 3352266 | 9.2.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C | 0.52 | 39.0 | 3.04e-01 | 84.2% | 46.6% |
| 3566775 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 39.0 | 2.53e-01 | 85.5% | 98.6% |
| 3648015 | 9.1.1.21 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Cyclin_D1_bind | 0.51 | 44.0 | 3.48e-01 | 100.0% | 81.8% |
| 3559952 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.51 | 37.0 | 2.73e-01 | 86.8% | 25.8% |
| 3303119 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.51 | 42.0 | 3.56e-01 | 94.7% | 93.3% |
| 3789933 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.50 | 40.0 | 3.68e-01 | 89.5% | 80.0% |
| 2849910 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.50 | 38.0 | 2.39e-01 | 86.8% | 19.0% |