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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00459

Bact-Vir

LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00459

Identity

Kingdom:
phage

Quality

79.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-136
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 38.0 4.67e-01 74.7% 78.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 5.41e-01 83.9% 91.9%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.67 44.0 4.62e-01 96.6% 74.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 44.0 5.01e-01 95.4% 93.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.38e-01 95.4% 94.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 44.0 4.97e-01 95.4% 93.7%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.93e-01 95.4% 95.2%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.65 48.0 4.47e-01 77.0% 75.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.77e-01 95.4% 89.4%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.27e-01 85.1% 100.0%
2x6hA02 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.62 51.0 4.24e-01 90.8% 80.3%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.32e-01 83.9% 69.6%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.62 37.0 4.12e-01 73.6% 77.3%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 39.0 3.19e-01 71.3% 35.3%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.11e-01 74.7% 100.0%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 44.0 4.31e-01 77.0% 88.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.77e-01 96.6% 94.4%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.59 37.0 3.31e-01 72.4% 44.0%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 48.0 3.25e-01 92.0% 47.4%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 40.0 2.83e-01 72.4% 41.1%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.56 46.0 4.01e-01 90.8% 86.8%
7vpjA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 41.0 3.23e-01 77.0% 79.7%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 40.0 2.88e-01 75.9% 43.7%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.56 43.0 4.66e-01 83.9% 97.3%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 49.0 4.24e-01 100.0% 79.4%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 38.0 2.81e-01 72.4% 40.1%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 49.0 4.43e-01 98.9% 82.6%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 49.0 4.23e-01 100.0% 79.4%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.55 41.0 3.53e-01 79.3% 75.2%
2fkcA01 3.40.1350.40 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 46.0 4.26e-01 92.0% 87.3%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 43.0 4.51e-01 83.9% 92.4%
1z9fA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.87e-01 74.7% 91.0%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 38.0 2.83e-01 77.0% 35.0%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 3.12e-01 92.0% 34.6%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.72e-01 88.5% 67.4%
2z84A00 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 47.0 3.57e-01 100.0% 88.1%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 37.0 3.39e-01 74.7% 73.6%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 4.22e-01 89.7% 93.7%
3l1wA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 44.0 3.23e-01 94.3% 74.5%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.52 43.0 3.63e-01 97.7% 54.1%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 35.0 3.76e-01 71.3% 84.5%
3lbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 37.0 2.80e-01 75.9% 68.1%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.47e-01 77.0% 62.2%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.51 40.0 3.48e-01 88.5% 84.2%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.68e-01 75.9% 100.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4345080 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 47.0 5.34e-01 96.6% 92.3%
4101580 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 47.0 5.29e-01 96.6% 92.3%
4399545 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.70 51.0 4.76e-01 75.9% 81.9%
3599172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 47.0 5.27e-01 96.6% 92.3%
3315471 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.69 47.0 4.81e-01 96.6% 71.8%
3608236 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 46.0 5.18e-01 95.4% 90.8%
4028885 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 46.0 5.23e-01 96.6% 92.3%
3306779 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 46.0 5.14e-01 95.4% 90.8%
4041586 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 46.0 5.18e-01 96.6% 92.3%
3585214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.11e-01 73.6% 55.0%
4135259 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 46.0 5.15e-01 96.6% 93.8%
4158157 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 45.0 5.09e-01 95.4% 90.8%
4037383 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 45.0 5.03e-01 95.4% 90.8%
3590827 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 45.0 5.05e-01 96.6% 92.3%
3950208 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 45.0 5.05e-01 96.6% 92.3%
3568329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 44.0 5.18e-01 96.6% 98.3%
4213539 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 44.0 4.90e-01 95.4% 89.2%
3265170 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 44.0 4.95e-01 95.4% 90.8%
4419948 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 43.0 4.88e-01 94.3% 89.2%
4049824 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 46.0 4.15e-01 96.6% 53.9%
4201878 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 44.0 4.99e-01 96.6% 92.3%
4646632 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 44.0 5.02e-01 96.6% 92.3%
4524363 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 44.0 4.98e-01 96.6% 92.3%
4038269 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 44.0 4.98e-01 96.6% 92.3%
3768347 4.1.1.230 beta barrels › SH3 › SH3 › SH3 › DUF7030 0.66 47.0 5.32e-01 85.1% 100.0%
4292289 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 44.0 4.96e-01 96.6% 92.3%
4284764 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 44.0 4.94e-01 96.6% 92.3%
3570369 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 43.0 4.29e-01 85.1% 64.4%
4073200 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 44.0 4.96e-01 95.4% 92.3%
142633 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 43.0 4.77e-01 95.4% 89.4%
4956007 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.64 47.0 4.44e-01 77.0% 75.2%
4051625 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 43.0 4.83e-01 96.6% 92.3%
4446791 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 42.0 4.75e-01 95.4% 90.8%
3507146 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 40.0 4.13e-01 86.2% 64.7%
4146937 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 43.0 4.77e-01 96.6% 92.3%
4646762 3480.1.1.1 a+b duplicates or obligate multimers › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein_17 0.64 44.0 4.47e-01 73.6% 72.9%
4104219 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 43.0 4.86e-01 96.6% 93.8%
4086925 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 42.0 4.68e-01 96.6% 89.2%
3994956 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 49.0 3.44e-01 87.4% 32.9%
5061113 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.61 38.0 4.67e-01 71.3% 100.0%
3954938 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.55e-01 96.6% 93.8%
3629536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 40.0 3.92e-01 96.6% 62.1%
3496126 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.60 47.0 4.73e-01 83.9% 89.8%
461497 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 46.0 3.75e-01 81.6% 50.9%
4093836 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.46e-01 97.7% 98.3%
3848483 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.59 45.0 4.31e-01 80.5% 99.0%
3862470 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 44.0 3.98e-01 86.2% 58.3%
4968081 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.58 36.0 4.29e-01 72.4% 100.0%
3783352 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 48.0 3.09e-01 93.1% 30.6%
3932878 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 39.0 2.76e-01 73.6% 40.3%
3824699 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 36.0 3.97e-01 85.1% 89.2%
3928760 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 48.0 3.15e-01 95.4% 24.2%
5051313 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 37.0 4.01e-01 97.7% 92.3%
3220419 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 39.0 3.66e-01 75.9% 88.2%
3233978 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 39.0 2.74e-01 75.9% 40.7%
3483990 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.53 37.0 2.62e-01 72.4% 40.7%
3387410 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 38.0 3.51e-01 75.9% 89.6%
4258307 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 45.0 3.21e-01 97.7% 31.8%
4269457 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.52 38.0 3.37e-01 79.3% 54.5%
3273300 3270.1.1.1 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.52 45.0 4.47e-01 100.0% 92.2%
3964724 3675.1.1.1 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.51 37.0 3.12e-01 97.7% 42.6%
4504902 3222.1.1.1 a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory 0.51 42.0 2.92e-01 92.0% 70.2%
3216820 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 39.0 2.76e-01 83.9% 30.0%
3213198 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 39.0 2.74e-01 83.9% 30.0%
3954034 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.50 37.0 2.91e-01 96.6% 34.9%
3479746 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.50 40.0 2.77e-01 86.2% 36.4%
4878713 331.3.1.42 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Mtb12_C 0.50 39.0 3.80e-01 86.2% 100.0%