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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00461
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00461
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-73
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 50.0 | 5.57e-01 | 85.7% | 92.0% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 53.0 | 5.29e-01 | 90.5% | 78.5% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.69 | 48.0 | 4.95e-01 | 85.7% | 78.0% |
| 2ckkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 52.0 | 5.61e-01 | 87.3% | 98.1% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 49.0 | 4.96e-01 | 92.1% | 78.1% |
| 1ug1A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 52.0 | 4.59e-01 | 88.9% | 66.3% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 54.0 | 5.06e-01 | 92.1% | 82.7% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 39.0 | 3.94e-01 | 82.5% | 62.9% |
| 2gfuA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 56.0 | 4.35e-01 | 100.0% | 53.7% |
| 5tjjB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.63 | 37.0 | 2.62e-01 | 100.0% | 20.8% |
| 6ghmC02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 50.0 | 4.98e-01 | 85.7% | 90.6% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 45.0 | 4.61e-01 | 87.3% | 81.7% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.62 | 50.0 | 5.02e-01 | 87.3% | 92.1% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 50.0 | 5.01e-01 | 87.3% | 95.3% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 50.0 | 4.95e-01 | 88.9% | 83.8% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 50.0 | 4.80e-01 | 87.3% | 81.9% |
| 5o99A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 49.0 | 5.02e-01 | 87.3% | 93.3% |
| 4fssB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 50.0 | 5.10e-01 | 88.9% | 98.4% |
| 1udlA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 50.0 | 4.29e-01 | 88.9% | 58.2% |
| 1yn8A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 48.0 | 5.00e-01 | 87.3% | 98.3% |
| 2ekhA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 48.0 | 4.44e-01 | 85.7% | 68.8% |
| 2egeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 48.0 | 4.57e-01 | 88.9% | 86.7% |
| 2jneA00 | 2.10.290.10 | Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like | 0.60 | 37.0 | 3.66e-01 | 87.3% | 56.3% |
| 4iimA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 48.0 | 5.08e-01 | 88.9% | 98.2% |
| 1n27A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 51.0 | 4.40e-01 | 95.2% | 64.6% |
| 1ov3A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 46.0 | 4.82e-01 | 85.7% | 100.0% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 37.0 | 3.53e-01 | 87.3% | 53.8% |
| 2pi2D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 42.0 | 3.46e-01 | 84.1% | 93.5% |
| 4omfB02 | 3.10.450.750 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 32.0 | 3.62e-01 | 77.8% | 78.7% |
| 3i35A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 41.0 | 4.30e-01 | 85.7% | 98.2% |
| 1x43A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 42.0 | 4.26e-01 | 88.9% | 96.8% |
| 6vlfA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 40.0 | 4.16e-01 | 85.7% | 96.6% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.53 | 41.0 | 3.31e-01 | 88.9% | 61.6% |
| 3fvqA03 | 2.40.50.470 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 38.0 | 3.90e-01 | 76.2% | 84.5% |
| 6uy8A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 40.0 | 4.10e-01 | 85.7% | 91.5% |
| 2evrA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 41.0 | 3.93e-01 | 88.9% | 86.5% |
| 3s6pA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.52 | 40.0 | 3.23e-01 | 88.9% | 50.0% |
| 1gcqB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 40.0 | 4.14e-01 | 87.3% | 96.5% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 36.0 | 3.09e-01 | 74.6% | 91.8% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 30.0 | 2.94e-01 | 79.4% | 49.3% |
| 2fpeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 39.0 | 3.92e-01 | 85.7% | 85.5% |
| 2p12A01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.51 | 37.0 | 2.80e-01 | 79.4% | 49.7% |
| 2rqtA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 39.0 | 3.94e-01 | 85.7% | 88.5% |
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.50 | 38.0 | 3.84e-01 | 85.7% | 90.9% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.50 | 28.0 | 3.17e-01 | 85.7% | 76.9% |
| 3d89A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.50 | 40.0 | 3.24e-01 | 93.7% | 76.5% |
ECOD (72)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957888 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.85 | 59.0 | 6.03e-01 | 88.9% | 75.0% |
| 4680376 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.76 | 51.0 | 5.49e-01 | 88.9% | 80.0% |
| 4974669 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.76 | 58.0 | 5.09e-01 | 92.1% | 56.7% |
| 3603847 | 4.1.1.144 ↗ | beta barrels › SH3 › SH3 › SH3 › Ago_PAZ_arc | 0.70 | 58.0 | 4.90e-01 | 88.9% | 77.0% |
| 3933788 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 54.0 | 5.57e-01 | 88.9% | 88.3% |
| 4644007 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.67 | 55.0 | 5.68e-01 | 92.1% | 94.9% |
| 4167587 | 4.1.1.178 ↗ | beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 | 0.66 | 57.0 | 5.11e-01 | 92.1% | 85.9% |
| 5035447 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 54.0 | 5.41e-01 | 93.7% | 93.8% |
| 3487686 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 52.0 | 4.69e-01 | 88.9% | 67.1% |
| 3216017 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 53.0 | 4.67e-01 | 90.5% | 74.4% |
| 3523802 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 51.0 | 5.25e-01 | 90.5% | 91.7% |
| 3914346 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.63 | 52.0 | 4.63e-01 | 90.5% | 64.4% |
| 3259033 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.63 | 52.0 | 5.30e-01 | 88.9% | 95.0% |
| 3569639 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.63 | 52.0 | 4.81e-01 | 90.5% | 72.5% |
| 3914833 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.63 | 51.0 | 4.93e-01 | 88.9% | 87.1% |
| 3769245 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.62 | 50.0 | 4.77e-01 | 88.9% | 78.7% |
| 4483819 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.62 | 51.0 | 4.90e-01 | 87.3% | 80.0% |
| 3270547 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.62 | 52.0 | 5.15e-01 | 90.5% | 89.2% |
| 3539147 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.62 | 51.0 | 4.94e-01 | 88.9% | 81.4% |
| 162441 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.62 | 50.0 | 4.88e-01 | 88.9% | 80.3% |
| 4133335 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.62 | 51.0 | 5.23e-01 | 88.9% | 93.3% |
| 3919980 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.62 | 50.0 | 4.97e-01 | 87.3% | 86.2% |
| 3548244 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.62 | 51.0 | 5.20e-01 | 88.9% | 95.0% |
| 4134876 | 4.1.1.334 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 | 0.61 | 49.0 | 3.61e-01 | 87.3% | 35.2% |
| 3747208 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.61 | 48.0 | 4.47e-01 | 85.7% | 68.8% |
| 3599257 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 49.0 | 4.88e-01 | 88.9% | 89.2% |
| 3911348 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 53.0 | 4.14e-01 | 96.8% | 46.2% |
| 4627221 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.61 | 40.0 | 3.98e-01 | 87.3% | 64.6% |
| 3573775 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.60 | 49.0 | 4.91e-01 | 88.9% | 90.8% |
| 3267416 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.60 | 49.0 | 4.59e-01 | 92.1% | 78.8% |
| 3882808 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.60 | 49.0 | 4.63e-01 | 90.5% | 77.3% |
| 3525376 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.59 | 48.0 | 4.79e-01 | 88.9% | 90.8% |
| 1930964 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.59 | 48.0 | 4.75e-01 | 90.5% | 85.3% |
| 3625909 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.59 | 47.0 | 4.34e-01 | 85.7% | 68.8% |
| 3417443 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.59 | 50.0 | 4.90e-01 | 93.7% | 89.9% |
| 3398702 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.59 | 47.0 | 4.78e-01 | 85.7% | 91.7% |
| 3561013 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.59 | 47.0 | 4.44e-01 | 87.3% | 74.7% |
| 3366511 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.59 | 48.0 | 4.76e-01 | 90.5% | 93.8% |
| 1699772 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 45.0 | 4.29e-01 | 85.7% | 71.4% |
| 3222195 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.58 | 47.0 | 4.73e-01 | 90.5% | 92.3% |
| 4610859 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 46.0 | 4.57e-01 | 87.3% | 86.2% |
| 3933965 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.58 | 45.0 | 4.67e-01 | 85.7% | 94.8% |
| 3904253 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.58 | 47.0 | 4.70e-01 | 88.9% | 90.8% |
| 3261986 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.58 | 46.0 | 4.76e-01 | 88.9% | 96.6% |
| 3217113 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 44.0 | 4.38e-01 | 82.5% | 81.5% |
| 3748846 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 49.0 | 4.88e-01 | 100.0% | 93.8% |
| 3217112 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.57 | 44.0 | 4.34e-01 | 85.7% | 78.6% |
| 3885695 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.57 | 44.0 | 4.16e-01 | 87.3% | 70.0% |
| 3563539 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.57 | 44.0 | 4.34e-01 | 87.3% | 80.0% |
| 3269589 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.57 | 45.0 | 4.40e-01 | 88.9% | 81.4% |
| 3998645 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.56 | 44.0 | 4.44e-01 | 87.3% | 84.6% |
| 3886646 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.56 | 49.0 | 4.88e-01 | 100.0% | 95.4% |
| 3737825 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.54 | 40.0 | 4.21e-01 | 82.5% | 94.5% |
| 3526953 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.53 | 41.0 | 4.15e-01 | 87.3% | 92.1% |
| 3924337 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 41.0 | 4.20e-01 | 87.3% | 95.0% |
| 3750163 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.53 | 41.0 | 4.03e-01 | 87.3% | 78.6% |
| 4994830 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.53 | 39.0 | 3.24e-01 | 79.4% | 47.8% |
| 3482677 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 40.0 | 3.95e-01 | 87.3% | 90.0% |
| 3503780 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.53 | 40.0 | 4.01e-01 | 85.7% | 83.1% |
| 3554994 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.53 | 41.0 | 3.76e-01 | 88.9% | 71.9% |
| 3898370 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.53 | 40.0 | 4.16e-01 | 87.3% | 100.0% |
| 3900208 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.53 | 40.0 | 4.02e-01 | 85.7% | 84.4% |
| 2410170 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.53 | 39.0 | 3.98e-01 | 84.1% | 93.7% |
| 3895391 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.52 | 40.0 | 3.82e-01 | 87.3% | 68.8% |
| 3480204 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.52 | 40.0 | 4.01e-01 | 87.3% | 90.8% |
| 3391702 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.52 | 40.0 | 3.79e-01 | 87.3% | 68.8% |
| 3317929 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.52 | 41.0 | 3.57e-01 | 88.9% | 58.0% |
| 3254502 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.52 | 40.0 | 3.56e-01 | 87.3% | 65.3% |
| 3214149 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.51 | 39.0 | 3.88e-01 | 87.3% | 89.2% |
| 3957060 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.51 | 40.0 | 3.16e-01 | 90.5% | 86.2% |
| 165220 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.50 | 39.0 | 3.82e-01 | 88.9% | 80.8% |
| 3398298 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.50 | 41.0 | 3.87e-01 | 98.4% | 75.0% |