←Back to structures
LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00488
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00488
Identity
- Kingdom:
- phage
Quality
95.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-47
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r31A01 | 3.30.2180.10 | Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like | 0.85 | 61.0 | 5.37e-01 | 89.1% | 53.0% |
| 1bq5A02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.65 | 45.0 | 3.07e-01 | 73.9% | 21.0% |
| 1gh9A00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.62 | 49.0 | 4.33e-01 | 89.1% | 77.5% |
| 2wuhA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 50.0 | 3.58e-01 | 100.0% | 31.3% |
| 1odhA02 | 3.30.70.3530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GCM motif | 0.52 | 41.0 | 3.94e-01 | 97.8% | 78.0% |
| 1wh4A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 42.0 | 3.49e-01 | 100.0% | 62.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3211468 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.58 | 47.0 | 3.34e-01 | 100.0% | 30.6% |
| 3970106 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.56 | 46.0 | 3.69e-01 | 95.7% | 74.0% |
| 2323826 | 4187.2.1.1 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA | 0.55 | 44.0 | 3.89e-01 | 100.0% | 59.0% |
| 4025567 | 4004.1.1.5 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › DAGK_acc | 0.53 | 44.0 | 2.79e-01 | 100.0% | 88.0% |
| 4950769 | 3987.1.1.0 ↗ | a+b complex topology › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain | 0.51 | 39.0 | 3.12e-01 | 89.1% | 63.8% |