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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00491
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00491
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-78_126-172
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00498__D1-72_107-146
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 33.0 | 4.13e-01 | 95.0% | 84.5% |
| 5lohB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 36.0 | 4.44e-01 | 74.2% | 100.0% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.56 | 39.0 | 3.71e-01 | 88.3% | 59.1% |
| 2vd5B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 39.0 | 3.36e-01 | 76.7% | 96.3% |
| 4fr4D01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 38.0 | 3.78e-01 | 75.8% | 70.5% |
| 2gsbA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 30.0 | 3.53e-01 | 91.7% | 82.1% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 32.0 | 3.55e-01 | 96.7% | 83.1% |
| 1mdcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 44.0 | 4.29e-01 | 95.8% | 90.1% |
| 2pmaA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.50 | 31.0 | 3.13e-01 | 82.5% | 60.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032095 | 6043.1.1.6 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › PF28288 | 0.64 | 35.0 | 4.36e-01 | 85.0% | 85.3% |
| 3584527 | 216.1.1.9 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d2 | 0.60 | 31.0 | 3.16e-01 | 95.0% | 49.6% |
| 3695635 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.60 | 38.0 | 4.35e-01 | 98.3% | 85.6% |
| 3479716 | 3459.1.1.0 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule | 0.57 | 36.0 | 4.13e-01 | 92.5% | 88.2% |
| 4991121 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 37.0 | 3.77e-01 | 96.7% | 70.4% |
| 3680674 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.55 | 34.0 | 2.88e-01 | 97.5% | 37.4% |
| 3420734 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.55 | 42.0 | 3.40e-01 | 81.7% | 92.8% |
| 5063347 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.54 | 33.0 | 3.90e-01 | 94.2% | 91.3% |
| 5009289 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.54 | 38.0 | 3.77e-01 | 87.5% | 68.8% |
| 4024746 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.53 | 41.0 | 3.36e-01 | 82.5% | 93.0% |
| 4023033 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 41.0 | 2.81e-01 | 83.3% | 81.1% |
| None | — | 0.52 | 40.0 | 2.68e-01 | 80.8% | 73.0% | |
| 3239880 | 4099.1.1.29 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29306 | 0.51 | 30.0 | 2.94e-01 | 96.7% | 50.4% |
| None | — | 0.50 | 34.0 | 2.57e-01 | 70.0% | 70.2% |
D2
medium
residues 79-125_173-215
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00498__D73-106_147-192
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11539.14 best | DUF3228 | 54.1 | 2.20e-14 | 54.4% | 21.1% |
| PF11539.14 | DUF3228 | 31.0 | 2.60e-07 | 51.1% | 18.0% |