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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00501

Bact-Vir

LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00501

Identity

Kingdom:
phage

Quality

56.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-49
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fd6U02 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.64 50.0 4.21e-01 100.0% 57.0%
3akhA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 45.0 3.23e-01 82.9% 81.0%
1z1yA01 2.90.20.10 Mainly Beta › Orthogonal Prism › Plasmodium vivax P25 fold › Plasmodium vivax P25 domain 0.55 40.0 2.77e-01 80.5% 86.5%
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 42.0 3.65e-01 100.0% 57.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3537046 1155.1.1.1 few secondary structure elements › Shisa 3 N-terminal domain › Shisa 3 N-terminal domain › Shisa 3 N-terminal domain › Shisa_N 0.59 45.0 4.39e-01 97.6% 76.0%
5025273 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.55 39.0 3.53e-01 78.0% 83.3%
4296144 2004.1.2.3 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › Hpr_kinase_C 0.55 37.0 2.60e-01 73.2% 82.5%
4547610 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.54 35.0 3.67e-01 87.8% 86.7%
D2 high residues 139-174
PDB
D3 medium residues 73-127
PDB