←Back to structures
LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00501
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00501
Identity
- Kingdom:
- phage
Quality
56.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-49
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fd6U02 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.64 | 50.0 | 4.21e-01 | 100.0% | 57.0% |
| 3akhA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.61 | 45.0 | 3.23e-01 | 82.9% | 81.0% |
| 1z1yA01 | 2.90.20.10 | Mainly Beta › Orthogonal Prism › Plasmodium vivax P25 fold › Plasmodium vivax P25 domain | 0.55 | 40.0 | 2.77e-01 | 80.5% | 86.5% |
| 2j8bA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.54 | 42.0 | 3.65e-01 | 100.0% | 57.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3537046 | 1155.1.1.1 ↗ | few secondary structure elements › Shisa 3 N-terminal domain › Shisa 3 N-terminal domain › Shisa 3 N-terminal domain › Shisa_N | 0.59 | 45.0 | 4.39e-01 | 97.6% | 76.0% |
| 5025273 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.55 | 39.0 | 3.53e-01 | 78.0% | 83.3% |
| 4296144 | 2004.1.2.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › Hpr_kinase_C | 0.55 | 37.0 | 2.60e-01 | 73.2% | 82.5% |
| 4547610 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.54 | 35.0 | 3.67e-01 | 87.8% | 86.7% |
D2
high
residues 139-174
D3
medium
residues 73-127