←Back to structures
LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00513
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00513
Identity
- Kingdom:
- phage
Quality
84.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-63
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 62.0 | 6.28e-01 | 95.2% | 82.3% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 54.0 | 6.01e-01 | 93.5% | 93.6% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 56.0 | 5.40e-01 | 95.2% | 71.8% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.74 | 63.0 | 6.29e-01 | 95.2% | 92.1% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 54.0 | 5.23e-01 | 95.2% | 70.8% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.65 | 56.0 | 4.13e-01 | 100.0% | 94.2% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 40.0 | 3.83e-01 | 85.5% | 56.2% |
| 7r7cr01 | 2.40.10.310 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 49.0 | 4.75e-01 | 87.1% | 98.6% |
| 1ohfA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.60 | 52.0 | 4.04e-01 | 100.0% | 51.1% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 42.0 | 2.66e-01 | 75.8% | 91.9% |
| 1v5mA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 50.0 | 3.96e-01 | 98.4% | 69.9% |
| 2lydA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 46.0 | 3.71e-01 | 100.0% | 64.2% |
| 1n7vA02 | 2.60.330.10 | Mainly Beta › Sandwich › receptor-binding protein prd1-p2, domain 2 › receptor-binding protein prd1-p2, domain 2 | 0.52 | 42.0 | 3.45e-01 | 91.9% | 73.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741680 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 65.0 | 6.89e-01 | 95.2% | 92.7% |
| 3564972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 65.0 | 6.25e-01 | 95.2% | 74.3% |
| 3568329 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 66.0 | 6.78e-01 | 95.2% | 88.3% |
| 3488114 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 62.0 | 4.97e-01 | 95.2% | 43.3% |
| 3315471 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.79 | 63.0 | 5.66e-01 | 95.2% | 62.4% |
| 4271974 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.77 | 59.0 | 5.89e-01 | 95.2% | 79.7% |
| 3660358 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 59.0 | 5.98e-01 | 95.2% | 85.0% |
| 3597255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 56.0 | 5.04e-01 | 93.5% | 58.8% |
| 4376886 | 4.1.1.241 ↗ | beta barrels › SH3 › SH3 › SH3 › NifZ | 0.75 | 65.0 | 5.94e-01 | 95.2% | 86.3% |
| 3725153 | 4.1.1.286 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7072 | 0.74 | 58.0 | 5.31e-01 | 95.2% | 65.0% |
| 3609256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 65.0 | 5.77e-01 | 95.2% | 70.6% |
| 4026274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 65.0 | 4.95e-01 | 98.4% | 42.9% |
| 5024617 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.69 | 61.0 | 5.28e-01 | 98.4% | 72.6% |
| 3659671 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.69 | 61.0 | 5.83e-01 | 95.2% | 84.3% |
| 1821014 | 4.1.1.70 ↗ | beta barrels › SH3 › SH3 › SH3 › Tsr0524-like | 0.68 | 59.0 | 5.87e-01 | 95.2% | 93.8% |
| 3540253 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.67 | 56.0 | 4.94e-01 | 95.2% | 67.4% |
| 3599666 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.67 | 59.0 | 3.51e-01 | 98.4% | 15.7% |
| 3476907 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.65 | 55.0 | 3.47e-01 | 93.5% | 31.6% |
| 7380 | 219.1.1.34 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 | 0.65 | 56.0 | 4.13e-01 | 100.0% | 94.2% |
| 4027502 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 50.0 | 5.00e-01 | 95.2% | 83.1% |
| 4982354 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.63 | 51.0 | 5.12e-01 | 95.2% | 87.7% |
| 4243780 | 206.1.1.30 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kinase-like | 0.62 | 55.0 | 3.39e-01 | 100.0% | 32.3% |
| 4996672 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 41.0 | 3.34e-01 | 87.1% | 58.4% |
| 4547666 | 220.1.1.71 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 | 0.53 | 44.0 | 3.64e-01 | 100.0% | 74.4% |