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LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00523
Bact-VirLacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00523
Identity
- Kingdom:
- phage
Quality
63.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 129-198
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tl4X02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.72 | 58.0 | 5.76e-01 | 97.1% | 84.7% |
| 3egoA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.68 | 57.0 | 4.85e-01 | 97.1% | 57.0% |
| 2og9A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.66 | 52.0 | 4.27e-01 | 100.0% | 46.2% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 50.0 | 4.88e-01 | 84.3% | 84.4% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 54.0 | 4.42e-01 | 95.7% | 92.1% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 46.0 | 4.33e-01 | 75.7% | 100.0% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 51.0 | 4.76e-01 | 90.0% | 70.1% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 51.0 | 4.03e-01 | 90.0% | 91.9% |
| 3aq5A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 52.0 | 4.48e-01 | 94.3% | 96.6% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 51.0 | 4.14e-01 | 95.7% | 84.0% |
| 3sjnA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.61 | 55.0 | 4.59e-01 | 100.0% | 81.5% |
| 3mvcB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 51.0 | 4.03e-01 | 95.7% | 88.3% |
| 3msyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 51.0 | 4.49e-01 | 100.0% | 76.6% |
| 2au3A04 | 1.20.50.30 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.59 | 36.0 | 3.99e-01 | 78.6% | 76.4% |
| 2iw5B00 | 1.20.58.1880 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 40.0 | 3.26e-01 | 94.3% | 36.8% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 51.0 | 4.56e-01 | 100.0% | 79.8% |
| 1j3eA00 | 1.20.1380.10 | Mainly Alpha › Up-down Bundle › Replication modulator SeqA, C-terminal DNA-binding domain › Replication modulator SeqA, C-terminal DNA-binding domain | 0.58 | 43.0 | 3.68e-01 | 78.6% | 69.6% |
| 1tt5B02 | 1.10.10.520 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 | 0.58 | 48.0 | 4.69e-01 | 92.9% | 87.0% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.58 | 50.0 | 4.55e-01 | 100.0% | 87.6% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.58 | 40.0 | 3.81e-01 | 98.6% | 59.1% |
| 1vpqA00 | 3.20.20.410 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Protein of unknown function UPF0759 | 0.57 | 49.0 | 3.42e-01 | 100.0% | 56.2% |
| 2hgkA01 | 1.20.1440.40 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › YqcC-like | 0.56 | 42.0 | 3.77e-01 | 84.3% | 99.0% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.55 | 47.0 | 4.34e-01 | 98.6% | 85.9% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.55 | 39.0 | 3.58e-01 | 81.4% | 54.5% |
| 1gvnA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 40.0 | 3.70e-01 | 94.3% | 60.9% |
| 1dkxA02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 37.0 | 3.56e-01 | 70.0% | 67.5% |
| 3rmiA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.54 | 48.0 | 4.22e-01 | 100.0% | 73.3% |
| 3nctA00 | 3.40.50.11880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein | 0.54 | 38.0 | 3.17e-01 | 75.7% | 56.2% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.54 | 45.0 | 3.80e-01 | 97.1% | 89.1% |
| 2pjqA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.54 | 41.0 | 3.86e-01 | 84.3% | 97.8% |
| 5jcpB01 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.54 | 44.0 | 3.37e-01 | 98.6% | 64.6% |
| 2psmA00 | 1.20.1250.70 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 | 0.53 | 43.0 | 3.69e-01 | 91.4% | 78.6% |
| 1ax8A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 47.0 | 3.86e-01 | 100.0% | 89.2% |
| 1tuoA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.53 | 37.0 | 3.22e-01 | 75.7% | 86.3% |
| 3ckyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 43.0 | 3.52e-01 | 100.0% | 49.3% |
| 5ts9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.51 | 44.0 | 3.44e-01 | 100.0% | 47.2% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.51 | 45.0 | 4.33e-01 | 97.1% | 89.9% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3166992 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.74 | 60.0 | 5.91e-01 | 94.3% | 82.7% |
| 4426344 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.73 | 61.0 | 6.19e-01 | 97.1% | 94.1% |
| 4124450 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.72 | 60.0 | 6.07e-01 | 98.6% | 94.1% |
| 3952621 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.71 | 60.0 | 6.03e-01 | 100.0% | 94.2% |
| 5033981 | 3705.1.1.0 ↗ | alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) | 0.71 | 54.0 | 5.20e-01 | 92.9% | 72.5% |
| 3957449 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.69 | 60.0 | 5.30e-01 | 95.7% | 68.0% |
| 4287075 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.67 | 58.0 | 5.34e-01 | 100.0% | 75.6% |
| 3740945 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.66 | 57.0 | 5.56e-01 | 94.3% | 92.0% |
| 5048577 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.65 | 52.0 | 5.02e-01 | 87.1% | 88.7% |
| 3530312 | 2485.1.1.120 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Strabismus | 0.65 | 42.0 | 3.32e-01 | 87.1% | 35.4% |
| 5003363 | 7000.1.1.1 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 | 0.63 | 55.0 | 5.11e-01 | 98.6% | 77.8% |
| 4941012 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.63 | 54.0 | 3.27e-01 | 100.0% | 24.6% |
| 4937420 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.63 | 52.0 | 3.17e-01 | 95.7% | 14.9% |
| 3276327 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.63 | 56.0 | 4.00e-01 | 100.0% | 86.3% |
| 3673508 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 53.0 | 4.65e-01 | 95.7% | 62.9% |
| 4981587 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.62 | 45.0 | 3.74e-01 | 78.6% | 90.8% |
| 5058380 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.62 | 49.0 | 4.41e-01 | 87.1% | 81.0% |
| 144712 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.62 | 50.0 | 4.49e-01 | 94.3% | 61.7% |
| 3687402 | 192.15.1.81 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › EMP70 | 0.62 | 49.0 | 3.76e-01 | 88.6% | 72.4% |
| 5022794 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 52.0 | 4.86e-01 | 97.1% | 83.3% |
| 5040355 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.61 | 45.0 | 3.79e-01 | 80.0% | 93.6% |
| 3419597 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.61 | 50.0 | 4.16e-01 | 95.7% | 51.2% |
| 5079853 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.61 | 45.0 | 3.72e-01 | 80.0% | 93.8% |
| 3643141 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.61 | 49.0 | 4.72e-01 | 95.7% | 78.8% |
| 4168740 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.60 | 51.0 | 3.92e-01 | 100.0% | 40.6% |
| 3708255 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 46.0 | 4.54e-01 | 92.9% | 81.3% |
| 3281363 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.59 | 48.0 | 4.09e-01 | 92.9% | 59.2% |
| 3280412 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.58 | 47.0 | 3.78e-01 | 92.9% | 47.3% |
| 4437729 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.58 | 45.0 | 4.14e-01 | 91.4% | 63.0% |
| 3733950 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.57 | 49.0 | 3.36e-01 | 100.0% | 51.0% |
| 4934951 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.56 | 49.0 | 4.60e-01 | 100.0% | 85.6% |
| 3488809 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.56 | 44.0 | 3.17e-01 | 88.6% | 84.3% |
| 4417423 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.56 | 47.0 | 3.74e-01 | 100.0% | 44.5% |
| 3530124 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 41.0 | 3.98e-01 | 95.7% | 70.0% |
| 3196323 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.55 | 46.0 | 4.38e-01 | 97.1% | 90.6% |
| 3590623 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.54 | 41.0 | 3.52e-01 | 82.9% | 76.7% |
| 3261133 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.53 | 47.0 | 3.79e-01 | 100.0% | 61.4% |
| 4948274 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.53 | 46.0 | 4.53e-01 | 100.0% | 98.7% |
| 3638437 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 38.0 | 2.74e-01 | 80.0% | 31.4% |