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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00004
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00004
Identity
- Kingdom:
- phage
Quality
72.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-86
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 38.0 | 4.23e-01 | 75.3% | 77.3% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.61 | 43.0 | 3.52e-01 | 74.1% | 43.6% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.61 | 54.0 | 3.68e-01 | 100.0% | 62.0% |
| 3h49B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 45.0 | 3.16e-01 | 80.0% | 97.0% |
| 1cruA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.59 | 51.0 | 3.29e-01 | 100.0% | 84.2% |
| 7uhyA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 52.0 | 3.58e-01 | 100.0% | 74.8% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 52.0 | 3.37e-01 | 97.6% | 68.4% |
| 3sh4A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 53.0 | 4.03e-01 | 100.0% | 73.3% |
| 2mqdA00 | 3.30.1460.60 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.58 | 45.0 | 4.04e-01 | 100.0% | 59.7% |
| 4uuwA03 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.58 | 41.0 | 3.45e-01 | 74.1% | 85.7% |
| 5kolD00 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.58 | 41.0 | 3.29e-01 | 74.1% | 75.6% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.57 | 50.0 | 4.15e-01 | 97.6% | 80.5% |
| 8f5dA05 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.57 | 46.0 | 3.41e-01 | 87.1% | 91.9% |
| 2kieA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.57 | 50.0 | 4.40e-01 | 96.5% | 79.0% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.57 | 40.0 | 4.02e-01 | 75.3% | 92.0% |
| 1okjB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 45.0 | 3.92e-01 | 84.7% | 68.5% |
| 3asiA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 51.0 | 4.01e-01 | 100.0% | 74.2% |
| 2r1bA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 51.0 | 3.85e-01 | 100.0% | 71.2% |
| 3pveA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 51.0 | 3.99e-01 | 100.0% | 74.9% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.56 | 43.0 | 3.66e-01 | 83.5% | 79.7% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 43.0 | 4.07e-01 | 85.9% | 87.6% |
| 1pz7A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 50.0 | 3.86e-01 | 100.0% | 70.2% |
| 2jd4A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 49.0 | 3.88e-01 | 100.0% | 73.9% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 41.0 | 3.75e-01 | 82.4% | 74.3% |
| 2ntkB00 | 3.60.20.20 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like | 0.53 | 46.0 | 3.59e-01 | 100.0% | 67.8% |
| 5vxzA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 47.0 | 3.60e-01 | 98.8% | 66.3% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.53 | 45.0 | 4.26e-01 | 94.1% | 91.3% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 38.0 | 3.51e-01 | 90.6% | 58.6% |
| 1snzB00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 39.0 | 2.71e-01 | 84.7% | 86.0% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3890751 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.74 | 50.0 | 4.92e-01 | 80.0% | 65.6% |
| 4112170 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.69 | 53.0 | 4.48e-01 | 82.4% | 57.9% |
| 3287961 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.67 | 58.0 | 4.15e-01 | 97.6% | 69.2% |
| 3175878 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 47.0 | 3.86e-01 | 74.1% | 45.8% |
| 4471281 | 10.1.1.89 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26321 | 0.64 | 53.0 | 3.83e-01 | 89.4% | 51.9% |
| 3796352 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.63 | 43.0 | 4.82e-01 | 72.9% | 93.8% |
| 3404272 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.62 | 51.0 | 4.15e-01 | 89.4% | 71.2% |
| 4952059 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.62 | 37.0 | 3.85e-01 | 92.9% | 62.5% |
| 3389881 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.61 | 54.0 | 4.11e-01 | 100.0% | 71.4% |
| 4578621 | 2484.1.1.12 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase | 0.60 | 53.0 | 3.96e-01 | 100.0% | 69.1% |
| 4947855 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 52.0 | 3.32e-01 | 100.0% | 65.9% |
| 145656 | 10.1.1.1 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 | 0.59 | 53.0 | 4.03e-01 | 100.0% | 73.3% |
| 3938315 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.58 | 53.0 | 3.96e-01 | 100.0% | 65.4% |
| 3572056 | 5.1.4.394 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_FAM234A_B | 0.58 | 50.0 | 3.20e-01 | 98.8% | 35.2% |
| 3479461 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.58 | 53.0 | 3.95e-01 | 100.0% | 73.2% |
| 3401966 | 2.1.1.350 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30298 | 0.58 | 40.0 | 3.24e-01 | 72.9% | 90.0% |
| 4113728 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.58 | 52.0 | 3.82e-01 | 100.0% | 70.2% |
| 3495596 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.58 | 52.0 | 3.78e-01 | 100.0% | 58.3% |
| 3740081 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.57 | 44.0 | 4.11e-01 | 98.8% | 65.5% |
| 3485287 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.57 | 52.0 | 3.90e-01 | 100.0% | 77.1% |
| 3585370 | 5.1.3.112 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40_2 | 0.57 | 50.0 | 3.68e-01 | 100.0% | 58.7% |
| 4538466 | 3197.1.1.1 ↗ | a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N | 0.57 | 43.0 | 3.72e-01 | 80.0% | 55.4% |
| 5013176 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.57 | 45.0 | 4.69e-01 | 96.5% | 97.3% |
| 3214084 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.57 | 51.0 | 4.08e-01 | 100.0% | 68.8% |
| 4927889 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.57 | 36.0 | 3.83e-01 | 72.9% | 73.3% |
| 3465240 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 49.0 | 3.43e-01 | 100.0% | 53.0% |
| 4402946 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.56 | 45.0 | 3.20e-01 | 90.6% | 84.5% |
| 3228776 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 49.0 | 3.40e-01 | 98.8% | 31.9% |
| 3917548 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.56 | 50.0 | 3.85e-01 | 100.0% | 70.0% |
| 3394987 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.55 | 50.0 | 3.90e-01 | 100.0% | 78.9% |
| 3389900 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.55 | 49.0 | 3.82e-01 | 100.0% | 71.1% |
| 5023931 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 37.0 | 3.97e-01 | 76.5% | 85.7% |
| 3237235 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.55 | 48.0 | 3.27e-01 | 100.0% | 42.4% |
| 169012 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.55 | 47.0 | 3.85e-01 | 100.0% | 80.0% |
| 3414510 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.55 | 49.0 | 3.83e-01 | 100.0% | 73.5% |
| 3509499 | 719.1.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF | 0.55 | 45.0 | 4.04e-01 | 90.6% | 85.8% |
| 3482450 | 10.1.1.1 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 | 0.55 | 49.0 | 3.74e-01 | 100.0% | 67.0% |
| 3627339 | 10.1.1.1 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 | 0.55 | 49.0 | 3.74e-01 | 100.0% | 70.0% |
| 3244934 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 48.0 | 3.22e-01 | 98.8% | 35.6% |
| 3239304 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.54 | 46.0 | 3.56e-01 | 98.8% | 45.4% |
| 3233005 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.54 | 46.0 | 3.36e-01 | 98.8% | 48.2% |
| 3741358 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 45.0 | 3.39e-01 | 97.6% | 39.1% |
| 3769483 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 45.0 | 3.98e-01 | 94.1% | 96.0% |
| 3236870 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 46.0 | 4.04e-01 | 98.8% | 71.5% |
| 3234330 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 42.0 | 3.97e-01 | 91.8% | 86.4% |
| 3430385 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.52 | 38.0 | 3.35e-01 | 76.5% | 54.4% |
| 4003250 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.52 | 46.0 | 3.92e-01 | 96.5% | 64.4% |
| 3219544 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 44.0 | 3.11e-01 | 98.8% | 38.1% |
| 3598127 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 2.98e-01 | 100.0% | 60.7% |
| 3640668 | 719.1.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF | 0.51 | 41.0 | 3.71e-01 | 90.6% | 86.4% |
| 5081796 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 46.0 | 3.64e-01 | 100.0% | 82.9% |
| 3894563 | 9.1.1.24 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 | 0.50 | 44.0 | 3.88e-01 | 98.8% | 82.0% |