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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00015
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00015
Identity
- Kingdom:
- phage
Quality
73.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-41_136-282
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00074__D706-861
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06114.20 best | Peptidase_M78 | 23.2 | 7.40e-05 | 57.9% | 68.0% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.69 | 35.0 | 4.47e-01 | 82.0% | 82.5% |
| 2wb0X01 | 1.10.269.10 | Mainly Alpha › Orthogonal Bundle › Adenovirus Single-stranded Dna-binding Protein, domain 1 › Adenovirus DNA-binding, N-terminal domain | 0.68 | 41.0 | 4.98e-01 | 78.7% | 90.6% |
| 3dteA01 | 1.10.10.2910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.68 | 41.0 | 5.15e-01 | 73.0% | 94.0% |
| 1pwuA04 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.61 | 45.0 | 4.23e-01 | 77.0% | 77.8% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 25.0 | 3.59e-01 | 70.8% | 84.7% |
| 2k3nA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.50 | 33.0 | 3.43e-01 | 86.0% | 71.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961903 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.82 | 63.0 | 7.10e-01 | 78.7% | 99.3% |
| 4961836 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.82 | 63.0 | 7.10e-01 | 78.7% | 99.3% |
| 5024540 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.80 | 61.0 | 6.82e-01 | 79.8% | 95.9% |
| 3679089 | 2498.1.1.51 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DA1-like | 0.72 | 57.0 | 4.99e-01 | 82.6% | 83.7% |
| 4937545 | 2498.1.1.60 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2268 | 0.71 | 51.0 | 4.60e-01 | 73.6% | 79.2% |
| 4523900 | 2498.1.1.60 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2268 | 0.71 | 51.0 | 5.05e-01 | 74.2% | 94.7% |
| 4937226 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.70 | 53.0 | 4.58e-01 | 77.0% | 92.7% |
| 4536357 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.69 | 61.0 | 5.62e-01 | 93.8% | 98.7% |
| 3251829 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.68 | 52.0 | 5.32e-01 | 78.1% | 96.5% |
| 5067898 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.67 | 49.0 | 4.49e-01 | 74.7% | 73.5% |
| 3110622 | 2498.1.1.24 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M61 | 0.65 | 49.0 | 4.29e-01 | 78.1% | 71.6% |
| 3969025 | 2498.1.1.65 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MATCAP | 0.64 | 55.0 | 4.17e-01 | 90.4% | 65.2% |
| 4203279 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.64 | 52.0 | 4.65e-01 | 84.3% | 100.0% |
| 3953982 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.56 | 45.0 | 4.28e-01 | 83.7% | 81.0% |
| 3790837 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 20.0 | 2.34e-01 | 96.6% | 43.0% |
| 3289507 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.54 | 41.0 | 4.65e-01 | 79.2% | 99.3% |
| 3681791 | 141.1.1.4 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C | 0.53 | 39.0 | 3.31e-01 | 75.3% | 78.0% |
| 3353615 | 101.1.10.21 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C | 0.53 | 40.0 | 3.56e-01 | 78.1% | 57.2% |
| 5053545 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.50 | 35.0 | 3.27e-01 | 70.2% | 92.7% |
D2
high
residues 44-130
Domain cluster:
rep: IMGVR_UViG_3300009502_000203-3300009502-Ga0114951_100020094__D33-117
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08401.17 best | ArdcN | 22.6 | 1.40e-04 | 92.0% | 67.5% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 33.0 | 3.06e-01 | 90.8% | 40.4% |
| 7w3rB01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 46.0 | 3.21e-01 | 83.9% | 67.1% |
| 2ougA00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.57 | 31.0 | 2.71e-01 | 85.1% | 31.9% |
| 4cbgD02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 44.0 | 3.64e-01 | 85.1% | 60.2% |
| 1ne2B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 45.0 | 3.64e-01 | 93.1% | 90.7% |
| 6zzmA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.53 | 42.0 | 3.21e-01 | 89.7% | 66.2% |
| 3lltA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 40.0 | 2.89e-01 | 83.9% | 50.4% |
| 1av4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.51 | 38.0 | 2.55e-01 | 83.9% | 84.7% |
| 2c7yA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 39.0 | 2.69e-01 | 89.7% | 48.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3712497 | 101.1.9.139 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Tc-38 | 0.85 | 53.0 | 6.32e-01 | 94.3% | 91.7% |
| 3716284 | 3609.1.1.3 ↗ | alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › Tc-38 | 0.84 | 54.0 | 6.18e-01 | 92.0% | 87.7% |
| 3612863 | 3609.1.1.3 ↗ | alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › Tc-38 | 0.78 | 61.0 | 4.47e-01 | 100.0% | 33.3% |
| 3947849 | 3609.1.1.4 ↗ | alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN | 0.76 | 67.0 | 6.70e-01 | 100.0% | 94.4% |
| 3933103 | 385.1.1.0 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines | 0.58 | 36.0 | 3.20e-01 | 93.1% | 41.1% |
| 4345008 | 3747.1.1.3 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C | 0.58 | 39.0 | 3.59e-01 | 90.8% | 53.0% |
| 4679580 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.56 | 41.0 | 3.09e-01 | 80.5% | 83.7% |
| 3734022 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.55 | 41.0 | 3.01e-01 | 89.7% | 27.7% |
| 3729789 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 40.0 | 2.59e-01 | 81.6% | 63.7% |
| 3209489 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.52 | 40.0 | 2.79e-01 | 86.2% | 67.2% |
| 3388402 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.52 | 44.0 | 3.57e-01 | 93.1% | 96.4% |
| 3023952 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 34.0 | 3.16e-01 | 70.1% | 73.5% |