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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00017
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00017
Identity
- Kingdom:
- phage
Quality
75.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-50
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3alfA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.62 | 49.0 | 4.52e-01 | 93.9% | 98.6% |
| 6inxA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.62 | 50.0 | 4.64e-01 | 93.9% | 100.0% |
| 4mnkA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.62 | 49.0 | 4.60e-01 | 93.9% | 98.5% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.61 | 47.0 | 4.57e-01 | 89.8% | 100.0% |
| 1itxA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.61 | 48.0 | 4.35e-01 | 93.9% | 98.6% |
| 1goiA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.60 | 47.0 | 4.13e-01 | 100.0% | 98.9% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 48.0 | 4.59e-01 | 93.9% | 76.8% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.59 | 46.0 | 4.28e-01 | 93.9% | 82.1% |
| 2dk7A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.58 | 39.0 | 3.44e-01 | 77.6% | 46.6% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 41.0 | 4.40e-01 | 100.0% | 90.5% |
| 3iylW04 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 46.0 | 3.02e-01 | 93.9% | 30.5% |
| 1owqA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 44.0 | 4.08e-01 | 93.9% | 100.0% |
| 1k1zA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 39.0 | 3.44e-01 | 75.5% | 76.9% |
| 1hxdA03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 39.0 | 4.06e-01 | 100.0% | 83.7% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 37.0 | 3.97e-01 | 95.9% | 87.2% |
| 1l1dA00 | 2.170.150.20 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. | 0.56 | 43.0 | 3.24e-01 | 91.8% | 56.2% |
| 1kfwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 44.0 | 4.22e-01 | 98.0% | 100.0% |
| 4erdA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 47.0 | 3.74e-01 | 100.0% | 67.6% |
| 1twfI01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 41.0 | 4.25e-01 | 98.0% | 87.0% |
| 1m2vB03 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.55 | 37.0 | 3.54e-01 | 100.0% | 56.5% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 47.0 | 3.61e-01 | 100.0% | 72.7% |
| 3o46A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.55 | 40.0 | 3.47e-01 | 81.6% | 69.0% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.55 | 43.0 | 4.27e-01 | 100.0% | 90.2% |
| 1qnaA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.55 | 43.0 | 3.56e-01 | 89.8% | 71.0% |
| 2eeiA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.54 | 39.0 | 3.23e-01 | 83.7% | 62.3% |
| 3r4rA02 | 2.60.40.2590 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 39.0 | 2.94e-01 | 95.9% | 30.4% |
| 1ywyA00 | 3.40.1170.40 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 | 0.54 | 43.0 | 3.85e-01 | 93.9% | 70.3% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 42.0 | 3.53e-01 | 100.0% | 89.4% |
| 1aisA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.52 | 42.0 | 3.56e-01 | 91.8% | 62.1% |
| 3ottA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 40.0 | 2.60e-01 | 95.9% | 91.0% |
| 4iapA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 43.0 | 3.60e-01 | 100.0% | 87.0% |
| 6o15A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 44.0 | 2.84e-01 | 100.0% | 61.8% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3183666 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.68 | 56.0 | 3.33e-01 | 95.9% | 25.6% |
| 4996608 | 2007.9.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 | 0.65 | 48.0 | 3.14e-01 | 77.6% | 20.5% |
| 4261505 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.63 | 49.0 | 4.62e-01 | 91.8% | 100.0% |
| 415434 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.62 | 49.0 | 4.49e-01 | 93.9% | 97.2% |
| 3189994 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.60 | 41.0 | 3.39e-01 | 71.4% | 43.3% |
| 3505640 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.60 | 41.0 | 3.87e-01 | 71.4% | 66.7% |
| 2475221 | 284.2.1.1 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 | 0.60 | 47.0 | 4.31e-01 | 93.9% | 100.0% |
| 3593875 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 40.0 | 3.87e-01 | 71.4% | 74.5% |
| 4960549 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 39.0 | 3.93e-01 | 71.4% | 80.0% |
| 3790194 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.58 | 41.0 | 4.20e-01 | 83.7% | 82.2% |
| 3699229 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.58 | 42.0 | 2.41e-01 | 77.6% | 45.6% |
| 2855565 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 41.0 | 3.53e-01 | 83.7% | 68.9% |
| 3174465 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 39.0 | 3.08e-01 | 98.0% | 33.6% |
| 3505958 | 5.1.3.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b | 0.55 | 45.0 | 2.91e-01 | 100.0% | 96.2% |
| 6502 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.55 | 43.0 | 4.17e-01 | 98.0% | 100.0% |
| 3225850 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.54 | 42.0 | 4.22e-01 | 93.9% | 100.0% |
| 3224950 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 45.0 | 3.58e-01 | 95.9% | 81.9% |
| 4524466 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.54 | 39.0 | 3.54e-01 | 100.0% | 55.7% |
| 3584264 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 44.0 | 3.43e-01 | 100.0% | 70.4% |
| 3789602 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 44.0 | 3.42e-01 | 100.0% | 70.4% |
| 3473109 | 220.1.1.247 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_34 | 0.53 | 43.0 | 4.08e-01 | 95.9% | 83.3% |
| 3602420 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.52 | 40.0 | 2.55e-01 | 87.8% | 90.2% |
| 3398093 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.52 | 36.0 | 3.50e-01 | 100.0% | 63.3% |
| 3816298 | 1.1.1.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 | 0.52 | 38.0 | 3.31e-01 | 83.7% | 98.8% |
| 4000280 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 38.0 | 3.79e-01 | 100.0% | 78.2% |
| 4944556 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.51 | 40.0 | 3.07e-01 | 93.9% | 47.9% |
| 3930651 | 3246.1.1.4 ↗ | few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_3 | 0.51 | 38.0 | 3.16e-01 | 100.0% | 44.2% |