←Back to structures
LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00042
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00042
Identity
- Kingdom:
- phage
Quality
65.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-164
D2
medium
residues 191-329
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wr8A02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.75 | 37.0 | 5.13e-01 | 100.0% | 95.7% |
| 1lfwA03 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 30.0 | 3.79e-01 | 84.9% | 67.0% |
| 4q5eA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.68 | 32.0 | 4.29e-01 | 85.6% | 84.0% |
| 5hnmC00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.67 | 57.0 | 5.23e-01 | 100.0% | 70.8% |
| 6vudA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.66 | 35.0 | 4.64e-01 | 99.3% | 96.0% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.61 | 31.0 | 3.72e-01 | 100.0% | 70.8% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.61 | 33.0 | 3.62e-01 | 94.2% | 64.0% |
| 1dcoA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.57 | 31.0 | 3.56e-01 | 100.0% | 71.7% |
| 3w3sA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 51.0 | 3.83e-01 | 100.0% | 74.0% |
| 4nx9A02 | 2.60.40.4390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 30.0 | 3.19e-01 | 96.4% | 57.0% |
| 1nf2A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 40.0 | 4.46e-01 | 100.0% | 96.2% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 30.0 | 3.63e-01 | 89.9% | 82.6% |
| 2lrrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.54 | 25.0 | 3.34e-01 | 92.1% | 82.9% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.54 | 38.0 | 4.33e-01 | 100.0% | 99.0% |
| 1tuwA00 | 3.30.70.1090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. | 0.53 | 34.0 | 3.77e-01 | 95.7% | 82.1% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 33.0 | 4.01e-01 | 88.5% | 100.0% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 30.0 | 3.86e-01 | 89.9% | 96.3% |
| 3zigA00 | 3.30.110.150 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein | 0.53 | 28.0 | 3.55e-01 | 100.0% | 86.6% |
| 4r3aA02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 36.0 | 3.63e-01 | 100.0% | 69.7% |
| 2r01A01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 44.0 | 4.33e-01 | 100.0% | 84.3% |
| 3pxvB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.51 | 46.0 | 4.18e-01 | 100.0% | 75.7% |
| 2ln3A00 | 3.30.110.140 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.51 | 28.0 | 3.49e-01 | 100.0% | 88.0% |
| 1v07A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 38.0 | 4.27e-01 | 95.7% | 99.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3602137 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.61 | 33.0 | 3.86e-01 | 97.1% | 74.7% |
| 4938255 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 28.0 | 3.55e-01 | 96.4% | 72.5% |
| 4255377 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.59 | 29.0 | 3.80e-01 | 92.1% | 85.3% |
| 4563894 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.57 | 28.0 | 3.50e-01 | 90.6% | 75.3% |
| 3639504 | 305.2.1.1 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a | 0.57 | 31.0 | 3.52e-01 | 100.0% | 68.2% |
| 4360895 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.57 | 20.0 | 2.31e-01 | 86.3% | 40.0% |
| 3669993 | 142.1.1.22 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C | 0.56 | 25.0 | 3.05e-01 | 89.2% | 64.7% |
| 3552466 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.55 | 27.0 | 3.65e-01 | 89.2% | 91.4% |
| 3698585 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.55 | 25.0 | 3.24e-01 | 92.1% | 73.8% |
| 3795605 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.53 | 30.0 | 2.76e-01 | 100.0% | 41.7% |
| 5047385 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.52 | 37.0 | 3.78e-01 | 100.0% | 76.1% |
| 3250910 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.51 | 26.0 | 3.45e-01 | 91.4% | 94.3% |
| 4019210 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.50 | 25.0 | 3.34e-01 | 91.4% | 91.4% |
| 3579998 | 101.1.2.83 ↗ | alpha arrays › HTH › HTH › winged helix domain › SKA1 | 0.50 | 40.0 | 4.12e-01 | 100.0% | 90.0% |