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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00051
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00051
Identity
- Kingdom:
- phage
Quality
74.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-63
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t7pA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.72 | 52.0 | 3.65e-01 | 76.0% | 95.5% |
| 2pvaA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.57 | 44.0 | 2.82e-01 | 98.0% | 87.6% |
| 4qunA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.56 | 47.0 | 3.03e-01 | 100.0% | 87.3% |
| 2f0cB01 | 6.10.140.2190 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 33.0 | 3.49e-01 | 90.0% | 68.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3894538 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.72 | 52.0 | 3.20e-01 | 80.0% | 48.2% |
| 3684054 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.65 | 50.0 | 3.14e-01 | 84.0% | 22.3% |
| 4947128 | 4336.1.1.15 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › EMC3_TMCO1 | 0.65 | 47.0 | 3.30e-01 | 76.0% | 27.3% |
| 3688424 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.59 | 47.0 | 2.98e-01 | 92.0% | 45.2% |
| 3944068 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.58 | 47.0 | 3.60e-01 | 94.0% | 73.6% |
| 3842454 | 11.1.1.419 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3694 | 0.55 | 47.0 | 2.96e-01 | 94.0% | 17.7% |