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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00062

Bact-Vir

LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00062

Identity

Kingdom:
phage

Quality

85.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-41
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k2dA00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.87 68.0 6.44e-01 100.0% 72.3%
3a43B02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.78 57.0 6.00e-01 97.4% 91.2%
2j9uB00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.74 64.0 6.09e-01 100.0% 95.7%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.72 60.0 5.66e-01 100.0% 77.6%
4aybP00 2.20.28.30 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L 0.72 54.0 5.25e-01 97.4% 72.7%
2g3mA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.69 50.0 3.98e-01 100.0% 40.0%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.68 59.0 5.49e-01 100.0% 78.0%
4tpuA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.66 51.0 5.23e-01 100.0% 91.9%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.65 51.0 4.87e-01 100.0% 73.5%
1t3uA01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.64 47.0 4.58e-01 92.3% 74.4%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.63 52.0 5.04e-01 100.0% 97.8%
2jz6A01 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.63 44.0 4.21e-01 100.0% 60.0%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 47.0 3.65e-01 100.0% 39.3%
1yc5A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.61 50.0 4.06e-01 100.0% 57.1%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.61 45.0 3.26e-01 84.6% 83.6%
4oifA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 42.0 3.61e-01 100.0% 46.8%
4ba0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 46.0 4.30e-01 100.0% 66.7%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 47.0 4.34e-01 97.4% 96.4%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 46.0 3.63e-01 100.0% 81.6%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 44.0 4.23e-01 92.3% 83.3%
5jouA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 43.0 3.49e-01 100.0% 43.0%
5trbA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 42.0 3.74e-01 94.9% 58.0%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 41.0 3.15e-01 87.2% 34.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 44.0 3.03e-01 100.0% 43.7%
2cklA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 45.0 3.47e-01 100.0% 46.9%
2cnzA00 2.60.40.1570 Mainly Beta › Sandwich › Immunoglobulin-like › Dr adhesin 0.54 43.0 3.21e-01 100.0% 51.2%
2ff4A03 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 44.0 3.46e-01 100.0% 92.9%
3lrqB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 43.0 3.62e-01 100.0% 53.8%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.54 45.0 3.87e-01 100.0% 59.1%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 44.0 3.78e-01 100.0% 62.0%
6x6uA01 3.60.9.10 Alpha Beta › 4-Layer Sandwich › Aldehyde Ferredoxin Oxidoreductase; A, domain 1 › Aldehyde ferredoxin oxidoreductase, N-terminal domain 0.53 43.0 2.78e-01 97.4% 50.7%
5hkxA04 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 44.0 4.34e-01 100.0% 95.5%
1g5gA03 2.60.40.1690 Mainly Beta › Sandwich › Immunoglobulin-like › Head and neck region of the ectodomain of NDV fusion glycoprotein 0.53 39.0 3.53e-01 100.0% 56.7%
4nzjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 41.0 3.22e-01 100.0% 40.2%
4r7eA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 38.0 3.43e-01 94.9% 58.0%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.51 36.0 2.80e-01 82.1% 47.0%
7l5aA02 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.51 40.0 2.84e-01 94.9% 32.8%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979655 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.85 78.0 5.29e-01 100.0% 32.0%
3278973 375.1.1.185 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.83 70.0 6.96e-01 100.0% 95.0%
3245312 375.1.1.51 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.82 63.0 6.58e-01 100.0% 94.3%
4990345 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 70.0 6.55e-01 100.0% 86.0%
3445679 375.1.1.51 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.82 67.0 6.32e-01 100.0% 77.1%
4943252 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.81 68.0 4.63e-01 100.0% 30.3%
4982792 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.80 70.0 4.61e-01 100.0% 26.2%
5028854 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.80 70.0 4.75e-01 100.0% 28.8%
4932421 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 65.0 6.07e-01 100.0% 74.0%
4928795 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 68.0 6.56e-01 100.0% 88.9%
3277720 375.1.1.185 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.78 62.0 6.17e-01 100.0% 90.0%
3401929 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 69.0 6.86e-01 100.0% 97.5%
3933289 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 57.0 5.54e-01 100.0% 75.6%
8005 375.1.1.57 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Vps36-NZF-N 0.74 64.0 6.09e-01 100.0% 95.7%
3290651 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 62.0 4.29e-01 100.0% 29.2%
3504586 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.73 60.0 4.11e-01 100.0% 25.2%
4952878 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.73 61.0 5.56e-01 100.0% 70.9%
3602943 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 59.0 5.50e-01 100.0% 74.0%
5027350 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.71 58.0 4.10e-01 100.0% 30.4%
3963491 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 58.0 5.85e-01 100.0% 97.5%
4470809 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 61.0 5.35e-01 100.0% 98.3%
5049794 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.71 59.0 4.13e-01 100.0% 30.3%
5068907 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 59.0 5.69e-01 97.4% 84.4%
4099915 375.1.1.128 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.69 55.0 5.74e-01 97.4% 100.0%
5016960 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 56.0 5.41e-01 100.0% 84.4%
2393285 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 53.0 4.22e-01 97.4% 46.2%
3668092 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 55.0 4.91e-01 100.0% 66.7%
5052386 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 55.0 5.56e-01 97.4% 97.5%
3600775 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 55.0 5.35e-01 100.0% 91.1%
3475783 822.2.1.1 a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.66 51.0 5.28e-01 97.4% 100.0%
4028011 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 56.0 5.39e-01 100.0% 88.9%
3425436 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 46.0 4.65e-01 82.1% 85.0%
3719787 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 52.0 5.17e-01 97.4% 95.0%
5066701 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 49.0 4.93e-01 100.0% 97.5%
3250876 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 50.0 4.68e-01 92.3% 100.0%
4206445 2003.1.4.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.63 51.0 3.14e-01 97.4% 15.0%
3352699 375.1.1.2 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rubredoxin 0.62 50.0 4.78e-01 100.0% 80.0%
4650888 2003.1.4.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.61 51.0 3.16e-01 100.0% 36.3%
3588629 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 53.0 5.15e-01 100.0% 90.7%
3388528 7056.1.1.0 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.61 47.0 4.70e-01 100.0% 90.0%
3287891 2003.1.4.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.60 51.0 3.14e-01 100.0% 35.6%
3622513 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 46.0 4.22e-01 100.0% 90.0%
5065494 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 49.0 4.60e-01 100.0% 78.0%
5031489 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.58 45.0 2.62e-01 97.4% 8.8%
4961283 101.1.2.935 alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.57 44.0 3.35e-01 97.4% 33.9%
4529546 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 43.0 3.37e-01 100.0% 37.1%
3570018 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 42.0 2.59e-01 94.9% 12.1%
3416902 192.8.1.119 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › zf-C3HC4 0.55 46.0 2.76e-01 100.0% 14.0%
4564843 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 41.0 3.19e-01 94.9% 35.1%
3511172 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 43.0 2.84e-01 100.0% 19.0%
4528585 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 41.0 2.68e-01 94.9% 16.5%
3614660 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.55 42.0 2.65e-01 100.0% 13.7%
3902544 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 47.0 3.43e-01 100.0% 39.1%
3485528 5046.1.1.194 extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › zf-C3HC4 0.55 43.0 2.71e-01 100.0% 15.0%
3632969 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.54 42.0 2.63e-01 94.9% 14.1%
4001214 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.54 44.0 3.48e-01 94.9% 43.3%
3933070 376.1.1.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.54 40.0 3.59e-01 94.9% 57.1%
3610584 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.54 40.0 3.17e-01 94.9% 34.3%
4148983 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.54 45.0 3.95e-01 100.0% 67.7%
4026888 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.54 46.0 2.71e-01 100.0% 12.2%
3485267 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 43.0 3.53e-01 100.0% 50.6%
3637145 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.53 42.0 3.44e-01 100.0% 45.6%
4110773 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.53 39.0 2.23e-01 94.9% 7.4%
4595968 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 39.0 3.62e-01 100.0% 66.2%
3790868 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.52 43.0 3.18e-01 100.0% 36.7%
5056857 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.52 39.0 2.38e-01 100.0% 11.2%
4948028 284.1.1.32 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP26_IF 0.52 42.0 3.30e-01 100.0% 79.0%
4452905 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.52 42.0 3.29e-01 100.0% 46.0%
3464292 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.52 38.0 2.68e-01 94.9% 23.7%
4028586 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.52 39.0 3.29e-01 97.4% 50.6%
1554242 376.1.1.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.52 38.0 3.43e-01 94.9% 58.0%
3772067 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.52 42.0 3.63e-01 100.0% 65.7%
3816922 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 35.0 2.15e-01 71.8% 18.9%
4014325 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 38.0 3.39e-01 100.0% 52.9%
3517305 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.51 38.0 3.14e-01 97.4% 44.2%
3914802 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 40.0 3.46e-01 97.4% 53.8%
4945987 284.1.1.32 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP26_IF 0.51 40.0 3.20e-01 100.0% 79.0%
4021522 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.51 39.0 3.74e-01 97.4% 76.0%
3867225 376.1.1.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.51 37.0 3.22e-01 94.9% 47.5%
4004083 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.51 38.0 3.02e-01 97.4% 43.7%
3223367 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 41.0 3.56e-01 97.4% 95.4%