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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00063
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00063
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-100
Domain cluster:
rep: NC_070623.1__YP_010644281.1__PPK14_gp46__00046__D13-92
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 48.0 | 5.83e-01 | 70.4% | 100.0% |
| 3mp6A05 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 45.0 | 5.55e-01 | 71.4% | 96.8% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.72 | 47.0 | 5.50e-01 | 71.4% | 97.0% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 49.0 | 5.24e-01 | 70.4% | 85.7% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 48.0 | 4.80e-01 | 70.4% | 79.4% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 43.0 | 4.91e-01 | 71.4% | 83.6% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 44.0 | 5.10e-01 | 70.4% | 91.3% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.69 | 58.0 | 5.05e-01 | 90.8% | 98.6% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 43.0 | 4.29e-01 | 70.4% | 62.0% |
| 4f88102 | 3.90.1720.60 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.67 | 48.0 | 3.68e-01 | 91.8% | 34.3% |
| 4ry2A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.66 | 45.0 | 3.95e-01 | 96.9% | 48.2% |
| 3e8lC00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.66 | 45.0 | 3.74e-01 | 70.4% | 100.0% |
| 2gs5A01 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.65 | 47.0 | 3.82e-01 | 75.5% | 83.0% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.61 | 42.0 | 4.05e-01 | 73.5% | 63.3% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 45.0 | 4.15e-01 | 85.7% | 60.8% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.59 | 40.0 | 3.71e-01 | 72.4% | 52.7% |
| 3feoB02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 40.0 | 4.25e-01 | 72.4% | 86.7% |
| 2rhiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 43.0 | 4.15e-01 | 84.7% | 83.9% |
| 2hqvA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.54 | 38.0 | 3.18e-01 | 73.5% | 61.6% |
| 3ceyB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 45.0 | 3.98e-01 | 92.9% | 74.5% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 41.0 | 4.21e-01 | 92.9% | 85.4% |
| 1wjrA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 44.0 | 4.05e-01 | 91.8% | 81.1% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 41.0 | 4.26e-01 | 85.7% | 91.1% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4559371 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.85 | 54.0 | 6.60e-01 | 73.5% | 100.0% |
| 4079197 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 51.0 | 5.46e-01 | 70.4% | 72.9% |
| 3290899 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.81 | 51.0 | 5.94e-01 | 71.4% | 90.0% |
| 4163661 | 4.1.1.446 ↗ | beta barrels › SH3 › SH3 › SH3 › PF30222 | 0.79 | 54.0 | 6.31e-01 | 70.4% | 100.0% |
| 5025364 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.76 | 50.0 | 5.66e-01 | 71.4% | 88.0% |
| 5070306 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 56.0 | 5.58e-01 | 76.5% | 97.0% |
| 3729666 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 52.0 | 5.00e-01 | 70.4% | 68.2% |
| 4011604 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.75 | 51.0 | 5.78e-01 | 72.4% | 92.0% |
| 4220126 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.74 | 58.0 | 6.26e-01 | 96.9% | 95.3% |
| 3783301 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 52.0 | 5.13e-01 | 95.9% | 68.6% |
| 3881119 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.73 | 46.0 | 5.09e-01 | 77.6% | 78.8% |
| 4555816 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 57.0 | 6.11e-01 | 90.8% | 96.5% |
| 3398093 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.72 | 43.0 | 5.26e-01 | 70.4% | 96.7% |
| 3576128 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 55.0 | 5.27e-01 | 90.8% | 71.3% |
| 4938445 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.70 | 46.0 | 4.13e-01 | 71.4% | 48.9% |
| 3342814 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.70 | 48.0 | 4.90e-01 | 70.4% | 88.4% |
| 3547084 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.70 | 47.0 | 4.93e-01 | 80.6% | 75.6% |
| 3765274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 48.0 | 5.02e-01 | 78.6% | 77.8% |
| 4937121 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.70 | 45.0 | 4.32e-01 | 74.5% | 56.5% |
| 4317035 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.70 | 45.0 | 4.85e-01 | 76.5% | 76.5% |
| 3967347 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.69 | 48.0 | 5.37e-01 | 71.4% | 94.7% |
| 3765289 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.69 | 45.0 | 4.69e-01 | 78.6% | 71.1% |
| 4002896 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.69 | 45.0 | 4.73e-01 | 77.6% | 72.2% |
| 3840679 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.68 | 46.0 | 4.68e-01 | 80.6% | 70.5% |
| 3517728 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.68 | 43.0 | 5.01e-01 | 74.5% | 90.0% |
| 3884661 | 4.1.1.382 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31078 | 0.68 | 48.0 | 4.68e-01 | 74.5% | 75.5% |
| 3210897 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 55.0 | 5.82e-01 | 86.7% | 100.0% |
| 3883159 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.67 | 44.0 | 4.56e-01 | 76.5% | 71.1% |
| 3630782 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.67 | 47.0 | 4.10e-01 | 72.4% | 55.2% |
| 3637664 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.66 | 50.0 | 4.68e-01 | 79.6% | 88.3% |
| 3370374 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.65 | 54.0 | 4.85e-01 | 89.8% | 91.1% |
| 3342793 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.64 | 44.0 | 3.55e-01 | 71.4% | 40.5% |
| 3662854 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.63 | 43.0 | 3.61e-01 | 70.4% | 46.1% |
| 3574784 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 41.0 | 3.99e-01 | 73.5% | 59.1% |
| 3354387 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.63 | 44.0 | 4.70e-01 | 72.4% | 95.3% |
| 3688068 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.63 | 43.0 | 3.76e-01 | 70.4% | 58.7% |
| 3933047 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.63 | 44.0 | 3.68e-01 | 71.4% | 53.1% |
| 3928711 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 51.0 | 5.49e-01 | 87.8% | 100.0% |
| 3244497 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.61 | 43.0 | 3.66e-01 | 71.4% | 56.0% |
| 3833030 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.61 | 42.0 | 3.73e-01 | 70.4% | 56.3% |
| 3587030 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 42.0 | 4.88e-01 | 71.4% | 100.0% |
| 3231154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 44.0 | 4.81e-01 | 84.7% | 92.5% |
| 3296140 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.60 | 53.0 | 3.45e-01 | 96.9% | 97.1% |
| 3795384 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 51.0 | 3.89e-01 | 90.8% | 43.7% |
| 3576940 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 53.0 | 4.00e-01 | 98.0% | 44.0% |
| 3629316 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 49.0 | 4.94e-01 | 91.8% | 90.0% |
| 1408049 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.56 | 42.0 | 3.75e-01 | 77.6% | 73.5% |
| 4032674 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.56 | 39.0 | 3.55e-01 | 71.4% | 66.9% |
| 3941958 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 38.0 | 4.00e-01 | 71.4% | 92.2% |
| 3363360 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.55 | 41.0 | 4.38e-01 | 82.7% | 92.9% |
| 4162532 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.55 | 37.0 | 4.16e-01 | 74.5% | 90.7% |
| 5018860 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.52 | 40.0 | 3.50e-01 | 94.9% | 53.3% |
| 3721314 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.50 | 41.0 | 3.96e-01 | 91.8% | 96.5% |