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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00096
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00096
Identity
- Kingdom:
- phage
Quality
77.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 57-163
Domain cluster:
rep: GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00487__D19-147
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kluA01 | 3.30.2220.30 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › | 0.69 | 62.0 | 6.19e-01 | 98.1% | 100.0% |
| 3fgxA00 | 3.30.2220.10 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 | 0.65 | 46.0 | 4.88e-01 | 89.7% | 83.3% |
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 36.0 | 4.08e-01 | 100.0% | 77.8% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 27.0 | 3.60e-01 | 70.1% | 89.3% |
| 2db2A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 29.0 | 3.11e-01 | 70.1% | 57.4% |
| 2f1dA01 | 3.30.230.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Imidazole glycerol phosphate dehydratase; domain 1 | 0.54 | 40.0 | 4.37e-01 | 95.3% | 94.4% |
| 3u1kC01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.53 | 46.0 | 3.65e-01 | 96.3% | 100.0% |
| 3ztvA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 39.0 | 2.74e-01 | 80.4% | 88.0% |
| 1ckmA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.51 | 40.0 | 3.59e-01 | 84.1% | 70.3% |
| 3en9A03 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 29.0 | 3.37e-01 | 97.2% | 80.8% |
| 2mhgA00 | 2.20.130.30 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 | 0.50 | 33.0 | 3.81e-01 | 82.2% | 94.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954554 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.68 | 55.0 | 5.58e-01 | 91.6% | 87.6% |
| 3975686 | 6050.1.1.2 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage_TAC_2 | 0.65 | 54.0 | 5.49e-01 | 88.8% | 100.0% |
| 4537543 | 3103.1.1.4 ↗ | alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_9 | 0.59 | 51.0 | 4.84e-01 | 94.4% | 98.4% |
| 4371213 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.54 | 41.0 | 4.24e-01 | 91.6% | 87.0% |
| 3376518 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.51 | 35.0 | 2.72e-01 | 70.1% | 76.3% |
| 3503175 | 206.1.2.2 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › PIP5K | 0.51 | 36.0 | 2.53e-01 | 72.0% | 40.6% |
| 3790333 | 11.1.1.1009 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26432 | 0.51 | 32.0 | 2.70e-01 | 71.0% | 35.3% |
| 4447628 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.51 | 39.0 | 2.75e-01 | 81.3% | 87.7% |
| 3497277 | 7556.1.1.0 ↗ | a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase | 0.51 | 39.0 | 2.71e-01 | 86.0% | 58.4% |