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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00144
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00144
Identity
- Kingdom:
- phage
Quality
72.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 63-127
Domain cluster:
rep: PPR_Contig_984988_prodigal-single.1__X__X__00205__D246-300
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.67 | 38.0 | 3.73e-01 | 75.4% | 50.0% |
| 3m7nA03 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.67 | 34.0 | 4.30e-01 | 70.8% | 91.2% |
| 2aklA01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.66 | 39.0 | 4.54e-01 | 76.9% | 88.4% |
| 1jj2Y00 | 2.20.25.30 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 36.0 | 3.54e-01 | 70.8% | 56.2% |
| 5cxmA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.56 | 41.0 | 3.60e-01 | 78.5% | 52.5% |
| 2nutB02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.55 | 34.0 | 3.54e-01 | 83.1% | 66.1% |
| 1vwxp00 | 2.20.25.30 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 35.0 | 3.22e-01 | 78.5% | 47.3% |
| 3lltA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 37.0 | 3.35e-01 | 72.3% | 88.2% |
| 1fjrA02 | 2.170.180.11 | Mainly Beta › Beta Complex › Methuselah ectodomain, domain 2 › Methuselah ectodomain, domain 2 | 0.53 | 36.0 | 2.97e-01 | 72.3% | 86.4% |
| 5ixcA01 | 3.40.1090.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain | 0.50 | 40.0 | 2.49e-01 | 93.8% | 22.5% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932429 | 375.1.1.13 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae | 0.71 | 38.0 | 3.90e-01 | 73.8% | 52.4% |
| 3790969 | 375.4.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like | 0.68 | 37.0 | 4.35e-01 | 72.3% | 82.5% |
| 4945128 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 36.0 | 4.55e-01 | 72.3% | 94.3% |
| 3366361 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 36.0 | 4.19e-01 | 75.4% | 90.0% |
| 4930635 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.61 | 33.0 | 3.87e-01 | 73.8% | 80.0% |
| 3743048 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.60 | 46.0 | 3.45e-01 | 83.1% | 61.2% |
| 5028391 | 375.1.1.13 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae | 0.60 | 37.0 | 3.32e-01 | 70.8% | 44.1% |
| 5075189 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.59 | 45.0 | 3.21e-01 | 83.1% | 95.6% |
| 5073213 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.59 | 44.0 | 3.16e-01 | 84.6% | 98.6% |
| 4946534 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.58 | 46.0 | 3.02e-01 | 84.6% | 84.6% |
| 5044642 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.58 | 44.0 | 2.99e-01 | 83.1% | 94.5% |
| 5044375 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.58 | 44.0 | 2.99e-01 | 81.5% | 93.2% |
| 4941648 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.58 | 45.0 | 3.24e-01 | 86.2% | 92.3% |
| 2642976 | 375.1.1.206 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae, Zn_ribbon_IS1595 | 0.57 | 36.0 | 3.30e-01 | 70.8% | 48.8% |
| 3980811 | 375.1.1.60 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR | 0.56 | 35.0 | 3.60e-01 | 80.0% | 66.7% |
| 1949611 | 375.1.1.13 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae | 0.56 | 35.0 | 3.18e-01 | 70.8% | 45.1% |
| 4981580 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 31.0 | 3.54e-01 | 70.8% | 75.0% |
| 3936596 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 38.0 | 3.48e-01 | 72.3% | 97.8% |
| 3974544 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 35.0 | 3.70e-01 | 80.0% | 74.5% |
| 4943069 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 44.0 | 3.42e-01 | 86.2% | 40.0% |
| 1510479 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.55 | 40.0 | 3.09e-01 | 78.5% | 89.7% |
| 3603682 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.55 | 47.0 | 3.32e-01 | 98.5% | 95.6% |
| 4933534 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.55 | 46.0 | 3.31e-01 | 95.4% | 98.0% |
| 3324892 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.55 | 39.0 | 3.56e-01 | 80.0% | 61.2% |
| 4227538 | 375.1.1.60 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR | 0.55 | 35.0 | 3.69e-01 | 81.5% | 76.4% |
| 4976822 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.54 | 42.0 | 3.38e-01 | 83.1% | 84.8% |
| 4991162 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.54 | 41.0 | 2.97e-01 | 84.6% | 28.4% |
| 4961493 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.54 | 42.0 | 3.31e-01 | 86.2% | 43.4% |
| 4028093 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 41.0 | 3.30e-01 | 81.5% | 85.6% |
| 5046730 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.54 | 42.0 | 3.37e-01 | 86.2% | 48.9% |
| 4024868 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 43.0 | 2.81e-01 | 86.2% | 92.5% |
| 4943890 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 40.0 | 3.20e-01 | 86.2% | 78.5% |
| 4520258 | 12.3.1.8 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N | 0.51 | 36.0 | 2.44e-01 | 78.5% | 84.1% |
| 3314730 | 375.1.1.13 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae | 0.50 | 34.0 | 3.58e-01 | 81.5% | 76.7% |