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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00234
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00234
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-113
Domain cluster:
rep: hypothetical_protein_EhV353__YP_294111__Emiliania_huxleyi_virus_86__181082__D8-106
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00383.30 best | dCMP_cyt_deam_1 | 35.2 | 1.30e-08 | 91.1% | 65.7% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.74 | 65.0 | 6.23e-01 | 100.0% | 82.7% |
| 2a6qA01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.63 | 25.0 | 3.74e-01 | 84.1% | 93.0% |
| 4n0rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 33.0 | 3.78e-01 | 92.0% | 67.1% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 21.0 | 2.63e-01 | 92.0% | 46.4% |
| 2b78A02 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.57 | 36.0 | 3.81e-01 | 83.2% | 70.6% |
| 2b5iB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 37.0 | 4.06e-01 | 76.1% | 79.8% |
| 1xreA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.54 | 36.0 | 3.71e-01 | 100.0% | 70.5% |
| 2ntkB00 | 3.60.20.20 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like | 0.52 | 36.0 | 3.00e-01 | 71.7% | 51.0% |
| 3c1yA01 | 3.40.1700.10 | Alpha Beta › 3-Layer(aba) Sandwich › YojJ-like (1 › DNA integrity scanning protein, DisA, N-terminal domain | 0.52 | 33.0 | 3.16e-01 | 100.0% | 52.9% |
| 7uzsX02 | 3.90.260.10 | Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like | 0.51 | 40.0 | 3.06e-01 | 85.0% | 91.4% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 36.0 | 3.95e-01 | 98.2% | 92.3% |
| 3qfgA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.45e-01 | 77.0% | 60.7% |
| 1vr9A01 | 3.90.1280.20 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › | 0.51 | 25.0 | 3.05e-01 | 81.4% | 75.0% |
| 1nkgA02 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.51 | 31.0 | 3.43e-01 | 86.7% | 78.8% |
| 3brkX01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 40.0 | 3.12e-01 | 100.0% | 37.0% |
| 3w6wB02 | 2.60.310.20 | Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › | 0.50 | 41.0 | 3.87e-01 | 87.6% | 79.4% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5042416 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.78 | 73.0 | 6.24e-01 | 100.0% | 78.2% |
| 4947404 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.77 | 72.0 | 6.24e-01 | 100.0% | 81.1% |
| 4448380 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.74 | 65.0 | 6.36e-01 | 100.0% | 87.5% |
| 3598984 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.70 | 65.0 | 5.69e-01 | 100.0% | 75.8% |
| 4212983 | 2492.1.1.15 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 | 0.66 | 53.0 | 5.56e-01 | 94.7% | 92.4% |
| 1108152 | 11.1.1.211 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF5060 | 0.63 | 33.0 | 3.77e-01 | 92.0% | 65.5% |
| 4542558 | 105.2.1.71 ↗ | alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C › HMMR_N | 0.61 | 35.0 | 2.68e-01 | 77.9% | 23.7% |
| 5033013 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 33.0 | 3.57e-01 | 92.0% | 64.2% |
| 3429551 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.58 | 52.0 | 3.58e-01 | 100.0% | 95.6% |
| 4959548 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.56 | 32.0 | 3.47e-01 | 91.2% | 67.0% |
| 4944075 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 37.0 | 3.85e-01 | 77.9% | 72.4% |
| 5059038 | 11.1.4.106 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA | 0.53 | 34.0 | 3.69e-01 | 85.0% | 78.9% |
| 5082108 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.53 | 32.0 | 3.63e-01 | 85.8% | 80.0% |
| 5037546 | 12.3.1.18 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydr_116N | 0.52 | 44.0 | 3.18e-01 | 97.3% | 67.3% |
| 4870700 | 10.9.1.2 ↗ | beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Haemocyan_bet_s | 0.51 | 34.0 | 3.61e-01 | 72.6% | 75.0% |
| 4949994 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 34.0 | 3.42e-01 | 92.9% | 65.8% |
| 4960365 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.50 | 42.0 | 3.61e-01 | 93.8% | 90.0% |
| 4931961 | 4126.1.1.5 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA_2 | 0.50 | 44.0 | 4.34e-01 | 98.2% | 96.7% |
| 4287411 | 4.1.1.182 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2097 | 0.50 | 30.0 | 3.38e-01 | 92.0% | 81.2% |