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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00248
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00248
Identity
- Kingdom:
- phage
Quality
49.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 435-549
D2
medium
residues 9-125
D3
medium
residues 131-207
D4
medium
residues 217-258_273-302
D5
medium
residues 340-404
Domain cluster:
rep: IMGVR_UViG_2870879507_000002-2870879507-2870883278__D277-331
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.79 | 55.0 | 4.33e-01 | 72.3% | 44.7% |
| 2zetC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 50.0 | 3.84e-01 | 73.8% | 38.3% |
| 3t7lA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 50.0 | 4.80e-01 | 75.4% | 78.4% |
| 5y20A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.65 | 45.0 | 4.88e-01 | 72.3% | 100.0% |
| 2cszA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 49.0 | 4.63e-01 | 81.5% | 71.1% |
| 3hcsA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 36.0 | 3.97e-01 | 90.8% | 71.2% |
| 2xocA01 | 3.30.40.140 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.61 | 44.0 | 4.16e-01 | 75.4% | 100.0% |
| 3o70A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 44.0 | 4.71e-01 | 76.9% | 100.0% |
| 3purA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 43.0 | 4.16e-01 | 75.4% | 89.2% |
| 7v8fB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 50.0 | 4.39e-01 | 95.4% | 63.0% |
| 1wffA00 | 4.10.1110.10 | Few Secondary Structures › Irregular › Zf-an1 domain › AN1-like Zinc finger | 0.59 | 42.0 | 3.89e-01 | 83.1% | 58.8% |
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 46.0 | 4.15e-01 | 84.6% | 94.2% |
| 5tdrA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 40.0 | 3.95e-01 | 72.3% | 74.3% |
| 2miqA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 43.0 | 3.86e-01 | 81.5% | 60.6% |
| 1wemA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 43.0 | 4.10e-01 | 81.5% | 86.8% |
| 3goxA02 | 3.30.60.130 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.57 | 41.0 | 4.47e-01 | 75.4% | 92.6% |
| 2d8yA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.56 | 48.0 | 4.74e-01 | 100.0% | 88.9% |
| 2co8A00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.54 | 47.0 | 4.38e-01 | 100.0% | 78.0% |
| 1vd4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 36.0 | 3.65e-01 | 80.0% | 71.0% |
| 1a7iA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.54 | 44.0 | 4.53e-01 | 93.8% | 100.0% |
| 3aslA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 43.0 | 4.30e-01 | 98.5% | 85.3% |
| 4hi8B00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.52 | 45.0 | 4.40e-01 | 96.9% | 87.5% |
| 7yuiB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 46.0 | 4.20e-01 | 100.0% | 94.3% |
| 2cuqA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.52 | 44.0 | 4.17e-01 | 100.0% | 78.8% |
| 1ul4A01 | 4.10.1100.10 | Few Secondary Structures › Irregular › DNA-binding domain of squamosa promoter binding protein-like 12 (lacking the second zinc- binding site) › Transcription factor, SBP-box domain | 0.50 | 40.0 | 4.10e-01 | 93.8% | 100.0% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3718357 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.83 | 49.0 | 5.82e-01 | 90.8% | 86.7% |
| 3496111 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.81 | 46.0 | 3.15e-01 | 90.8% | 18.0% |
| 3627614 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.79 | 57.0 | 5.91e-01 | 75.4% | 93.3% |
| 3684391 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.78 | 51.0 | 4.52e-01 | 95.4% | 47.8% |
| 3733728 | 376.1.3.31 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 | 0.78 | 50.0 | 4.68e-01 | 75.4% | 53.8% |
| 3478913 | 376.1.3.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 | 0.77 | 53.0 | 4.79e-01 | 70.8% | 61.2% |
| 3847015 | 192.7.1.79 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FYVE_2 | 0.77 | 55.0 | 5.70e-01 | 73.8% | 90.0% |
| 3472338 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.77 | 53.0 | 5.47e-01 | 70.8% | 86.7% |
| 3562969 | 376.1.3.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 | 0.77 | 54.0 | 5.68e-01 | 73.8% | 90.0% |
| 3798139 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.76 | 55.0 | 4.78e-01 | 75.4% | 57.9% |
| 3582138 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.76 | 55.0 | 4.70e-01 | 75.4% | 56.0% |
| 3301384 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.75 | 54.0 | 5.82e-01 | 75.4% | 98.2% |
| 5065598 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.74 | 39.0 | 5.04e-01 | 86.2% | 94.3% |
| 3830263 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.74 | 53.0 | 5.99e-01 | 75.4% | 100.0% |
| 5031996 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 53.0 | 5.77e-01 | 76.9% | 98.2% |
| 3706927 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.72 | 52.0 | 5.42e-01 | 75.4% | 98.3% |
| 3700825 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.72 | 52.0 | 4.52e-01 | 75.4% | 62.1% |
| 3642066 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 44.0 | 5.18e-01 | 75.4% | 91.1% |
| 3472433 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 50.0 | 5.65e-01 | 73.8% | 100.0% |
| 3466575 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 52.0 | 5.23e-01 | 76.9% | 87.7% |
| 3599075 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 48.0 | 5.15e-01 | 70.8% | 100.0% |
| 3554759 | 376.1.3.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_CARP1-2 | 0.69 | 54.0 | 5.62e-01 | 100.0% | 91.7% |
| 3606495 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.69 | 61.0 | 6.19e-01 | 98.5% | 98.4% |
| 5059962 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 43.0 | 4.54e-01 | 83.1% | 72.4% |
| 3717537 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.68 | 48.0 | 5.21e-01 | 75.4% | 89.1% |
| 3307915 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.67 | 59.0 | 5.97e-01 | 96.9% | 100.0% |
| 3066048 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.67 | 44.0 | 3.97e-01 | 90.8% | 48.4% |
| 5061253 | 376.1.3.97 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 | 0.67 | 54.0 | 5.00e-01 | 95.4% | 70.0% |
| 4466003 | 376.1.3.44 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva | 0.66 | 58.0 | 5.90e-01 | 96.9% | 98.5% |
| 5080685 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.66 | 57.0 | 5.57e-01 | 95.4% | 100.0% |
| 4946657 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 53.0 | 5.39e-01 | 90.8% | 100.0% |
| 3592068 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 53.0 | 5.56e-01 | 100.0% | 100.0% |
| 5042937 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 50.0 | 5.40e-01 | 100.0% | 98.2% |
| 3634154 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.64 | 50.0 | 5.01e-01 | 93.8% | 81.5% |
| 4002569 | 376.1.1.78 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zf_2nd_IFT121 | 0.64 | 50.0 | 4.79e-01 | 93.8% | 74.7% |
| 3623578 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.63 | 54.0 | 5.04e-01 | 98.5% | 77.5% |
| 4940846 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 45.0 | 4.68e-01 | 75.4% | 89.8% |
| 5074886 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 51.0 | 5.03e-01 | 95.4% | 98.6% |
| 3685606 | 376.1.3.31 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 | 0.62 | 42.0 | 4.29e-01 | 70.8% | 92.3% |
| 3726465 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.62 | 46.0 | 4.69e-01 | 80.0% | 89.2% |
| 4985634 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 53.0 | 5.39e-01 | 93.8% | 100.0% |
| 3564830 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.61 | 52.0 | 4.26e-01 | 95.4% | 53.6% |
| 3414632 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.61 | 53.0 | 4.82e-01 | 100.0% | 73.3% |
| 3928741 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.60 | 48.0 | 4.38e-01 | 86.2% | 90.6% |
| 3269935 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.60 | 46.0 | 3.86e-01 | 83.1% | 74.5% |
| 3822811 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 47.0 | 4.20e-01 | 86.2% | 87.8% |
| 3259913 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 47.0 | 4.44e-01 | 84.6% | 96.0% |
| 3907480 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.59 | 45.0 | 4.09e-01 | 84.6% | 91.1% |
| 3995951 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 46.0 | 4.21e-01 | 84.6% | 92.9% |
| 3924159 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 51.0 | 4.59e-01 | 98.5% | 71.1% |
| 3728775 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 47.0 | 4.25e-01 | 86.2% | 89.4% |
| 3498231 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 46.0 | 4.19e-01 | 86.2% | 92.9% |
| 5001950 | 266.1.1.1 ↗ | a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt | 0.57 | 48.0 | 3.24e-01 | 93.8% | 78.7% |
| 3717337 | 376.1.1.165 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › FYVE | 0.57 | 46.0 | 4.43e-01 | 93.8% | 76.0% |
| None | — | 0.57 | 44.0 | 3.93e-01 | 95.4% | 58.9% | |
| 3702126 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.56 | 43.0 | 4.01e-01 | 84.6% | 94.1% |
| 3259718 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.56 | 43.0 | 3.74e-01 | 84.6% | 73.3% |
| 3869401 | 376.1.3.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 | 0.56 | 50.0 | 3.89e-01 | 100.0% | 45.7% |
| 3906952 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.55 | 43.0 | 3.71e-01 | 86.2% | 76.0% |
| 3559289 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 42.0 | 3.93e-01 | 86.2% | 92.9% |
| 3736484 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 46.0 | 4.06e-01 | 92.3% | 78.9% |
| 3623406 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.53 | 44.0 | 3.89e-01 | 92.3% | 62.1% |
| 3655538 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.53 | 42.0 | 3.87e-01 | 87.7% | 74.1% |
| 3257582 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.53 | 45.0 | 4.52e-01 | 93.8% | 98.5% |
| 3720327 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 47.0 | 4.06e-01 | 100.0% | 84.0% |
| 3901194 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 46.0 | 4.17e-01 | 100.0% | 98.9% |
| 3796017 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.52 | 46.0 | 4.42e-01 | 98.5% | 98.7% |
| 3900352 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.52 | 46.0 | 4.08e-01 | 100.0% | 90.5% |
| 3636201 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 45.0 | 3.76e-01 | 100.0% | 96.5% |
| 3788517 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 45.0 | 3.61e-01 | 100.0% | 94.6% |
| 3696220 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 42.0 | 3.65e-01 | 100.0% | 73.7% |