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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00263

Bact-Vir

LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00263

Identity

Kingdom:
phage

Quality

73.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-59
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 49.0 4.06e-01 100.0% 45.0%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 51.0 4.12e-01 100.0% 46.3%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 3.75e-01 100.0% 36.7%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.61 44.0 3.48e-01 79.2% 47.9%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.72e-01 100.0% 54.0%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 37.0 3.16e-01 79.2% 38.5%
1zyiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.17e-01 77.4% 91.4%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.68e-01 84.9% 61.2%
3i9v700 3.30.920.80 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 0.53 43.0 3.26e-01 90.6% 95.3%
1v95A01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 44.0 3.50e-01 100.0% 86.2%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 2.96e-01 84.9% 67.4%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3629491 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 49.0 4.88e-01 100.0% 81.8%
3583241 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 3.81e-01 98.1% 41.9%
5001324 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 3.80e-01 100.0% 42.9%
3217950 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 3.81e-01 100.0% 43.8%
4961179 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.57 40.0 4.09e-01 79.2% 78.0%
4164380 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 39.0 3.51e-01 75.5% 96.2%
1094905 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.55 39.0 3.65e-01 84.9% 58.6%
3514123 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 47.0 3.59e-01 98.1% 48.8%
3891033 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 39.0 3.60e-01 84.9% 57.5%
5077512 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.53 45.0 3.29e-01 100.0% 91.6%
939 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 38.0 2.96e-01 84.9% 67.4%
3581945 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.51 36.0 3.50e-01 100.0% 68.3%