←Back to structures
LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00269
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00269
Identity
- Kingdom:
- phage
Quality
75.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-56
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bx9C00 | 1.10.150.780 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Vps16, C-terminal region | 0.83 | 70.0 | 5.47e-01 | 97.8% | 45.3% |
| 2xz2A00 | 1.20.960.50 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Cleavage stimulation factor subunit 1, dimerisation domain | 0.80 | 56.0 | 4.93e-01 | 87.0% | 51.5% |
| 2vxgA01 | 6.10.140.270 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 61.0 | 6.15e-01 | 82.6% | 84.8% |
| 3bg1B03 | 1.25.40.690 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.72 | 62.0 | 4.95e-01 | 97.8% | 85.9% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 52.0 | 4.86e-01 | 80.4% | 76.3% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 59.0 | 5.78e-01 | 97.8% | 90.0% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 53.0 | 5.28e-01 | 100.0% | 83.3% |
| 3egoA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.68 | 55.0 | 4.22e-01 | 100.0% | 56.2% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 56.0 | 4.38e-01 | 100.0% | 67.3% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 4.87e-01 | 95.7% | 87.5% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 48.0 | 3.87e-01 | 97.8% | 41.2% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.60 | 49.0 | 3.71e-01 | 95.7% | 87.6% |
| 4dllB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 48.0 | 3.55e-01 | 95.7% | 81.5% |
| 1vpdA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 50.0 | 3.63e-01 | 100.0% | 64.1% |
| 3g0oA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 46.0 | 3.48e-01 | 95.7% | 85.1% |
| 1ks9A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 38.0 | 3.07e-01 | 95.7% | 50.4% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.51 | 39.0 | 3.45e-01 | 87.0% | 65.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027845 | 558.1.1.20 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › LisH_WDR26 | 0.85 | 57.0 | 5.57e-01 | 78.3% | 64.0% |
| 5057555 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.80 | 69.0 | 6.38e-01 | 97.8% | 75.0% |
| 4354100 | 558.1.1.15 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › LisH_PAC1 | 0.80 | 63.0 | 5.93e-01 | 95.7% | 70.9% |
| 3449126 | 558.1.1.15 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › LisH_PAC1 | 0.79 | 57.0 | 5.61e-01 | 87.0% | 72.0% |
| 3699429 | 109.4.1.72 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C | 0.78 | 69.0 | 4.62e-01 | 100.0% | 47.1% |
| 5000678 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.75 | 63.0 | 4.97e-01 | 97.8% | 87.0% |
| 3580559 | 109.59.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › TPR_IFT80_172 | 0.74 | 57.0 | 3.76e-01 | 82.6% | 22.0% |
| 2572 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.74 | 62.0 | 5.67e-01 | 97.8% | 71.4% |
| 5072420 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 62.0 | 6.08e-01 | 97.8% | 90.0% |
| 4954539 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 59.0 | 5.79e-01 | 97.8% | 90.0% |
| 5030106 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.71 | 60.0 | 5.72e-01 | 97.8% | 81.8% |
| 3599784 | 4156.1.1.2 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C | 0.70 | 59.0 | 3.80e-01 | 100.0% | 34.9% |
| 5011763 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.70 | 57.0 | 5.48e-01 | 97.8% | 80.0% |
| 4984064 | 101.1.1.61 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AsnC-type | 0.69 | 59.0 | 5.61e-01 | 97.8% | 81.8% |
| 5055912 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 58.0 | 5.12e-01 | 97.8% | 64.3% |
| 3617802 | 109.4.1.1216 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_KNTC1_1st | 0.69 | 57.0 | 4.34e-01 | 91.3% | 68.6% |
| None | — | 0.69 | 56.0 | 3.43e-01 | 100.0% | 15.1% | |
| 4932527 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.68 | 56.0 | 3.39e-01 | 100.0% | 13.1% |
| 4945046 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 56.0 | 4.36e-01 | 97.8% | 41.9% |
| 5062184 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.67 | 56.0 | 5.23e-01 | 97.8% | 75.0% |
| 4979948 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 55.0 | 5.27e-01 | 97.8% | 80.0% |
| 4499345 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 52.0 | 5.16e-01 | 95.7% | 94.0% |
| None | — | 0.66 | 58.0 | 5.02e-01 | 97.8% | 74.3% | |
| 3566375 | 558.1.1.2 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › FOP_dimer | 0.66 | 57.0 | 4.95e-01 | 97.8% | 74.3% |
| None | — | 0.64 | 45.0 | 2.85e-01 | 80.4% | 24.6% | |
| 3984129 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 50.0 | 4.57e-01 | 91.3% | 66.2% |
| 3702559 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.54 | 45.0 | 2.49e-01 | 100.0% | 42.7% |