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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00284

Bact-Vir

LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00284

Identity

Kingdom:
phage

Quality

62.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-125
PDB
D2 medium residues 126-181
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.67 41.0 3.84e-01 89.3% 50.0%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.66 49.0 3.88e-01 96.4% 38.9%
3c8gD00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.66 47.0 3.35e-01 82.1% 26.1%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 49.0 3.40e-01 82.1% 92.4%
4ie5A02 1.20.58.1470 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FTO C-terminal domain 0.58 48.0 3.60e-01 100.0% 38.1%
3vkhB01 1.10.287.2620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 43.0 4.15e-01 96.4% 76.6%
4b7yD00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 47.0 3.96e-01 100.0% 62.9%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.52 37.0 2.58e-01 94.6% 23.3%
4pl0A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 2.96e-01 98.2% 33.2%
2jroA01 3.30.1910.10 Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain 0.52 44.0 4.26e-01 96.4% 95.4%
7x4eA01 1.10.1220.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE 0.51 36.0 3.02e-01 76.8% 73.8%
5dkoA02 1.10.3900.10 Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like 0.51 40.0 3.05e-01 96.4% 34.7%
2q1sA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.50 40.0 3.60e-01 100.0% 79.6%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.50 39.0 3.11e-01 96.4% 63.4%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3783116 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 41.0 3.65e-01 87.5% 38.7%
3284448 873.1.1.7 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd 0.67 40.0 2.73e-01 80.4% 17.4%
3579599 109.4.1.1871 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi, PF26720 0.63 51.0 3.27e-01 100.0% 18.0%
3470611 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.61 49.0 3.06e-01 89.3% 39.4%
3200743 109.4.1.583 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.61 48.0 2.90e-01 91.1% 12.8%
4618209 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 45.0 2.88e-01 100.0% 16.8%
3322831 109.4.1.576 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-5 0.58 50.0 3.11e-01 98.2% 42.1%
3788423 604.1.1.132 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KAR9 0.58 47.0 3.88e-01 100.0% 49.5%
5027339 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.57 50.0 4.16e-01 98.2% 83.8%
4553515 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.57 47.0 4.10e-01 92.9% 60.0%
5068933 101.1.7.0 ↗ alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C 0.56 46.0 4.11e-01 91.1% 68.8%
3971673 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 39.0 2.44e-01 100.0% 15.2%
3564419 603.1.1.98 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 0.54 49.0 3.25e-01 100.0% 59.0%
4107955 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.53 46.0 2.79e-01 94.6% 17.3%
3207999 3660.1.1.4 ↗ alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › DUF7785 0.53 48.0 3.99e-01 100.0% 65.3%
3592986 7568.1.1.0 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.52 44.0 3.21e-01 96.4% 64.8%
3559289 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 39.0 3.34e-01 83.9% 51.8%
3612479 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.58e-01 89.3% 86.7%
5047904 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.51 43.0 3.72e-01 94.6% 64.4%
3828954 3324.1.1.1 ↗ extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › MTR4_beta-barrel 0.51 46.0 3.64e-01 100.0% 52.7%
3687239 109.4.1.563 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3437 0.50 43.0 2.93e-01 100.0% 39.9%