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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00347
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00347
Identity
- Kingdom:
- phage
Quality
86.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 41-97
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b8vA03 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.89 | 72.0 | 7.65e-01 | 100.0% | 100.0% |
| 4b8vA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.86 | 68.0 | 6.47e-01 | 100.0% | 73.1% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.83 | 72.0 | 6.55e-01 | 100.0% | 72.6% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.82 | 61.0 | 6.65e-01 | 96.5% | 100.0% |
| 2djpA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.76 | 60.0 | 5.43e-01 | 100.0% | 63.6% |
| 2mkxA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.75 | 58.0 | 6.04e-01 | 100.0% | 94.1% |
| 2mg4A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 48.0 | 4.62e-01 | 73.7% | 71.2% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 57.0 | 4.90e-01 | 98.2% | 59.1% |
| 3by4A00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.66 | 49.0 | 3.51e-01 | 80.7% | 42.4% |
| 6klwF03 | 3.10.20.110 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 46.0 | 3.92e-01 | 100.0% | 89.0% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 3.41e-01 | 93.0% | 44.0% |
| 3awiA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 44.0 | 2.94e-01 | 96.5% | 78.0% |
| 5oomJ01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.53 | 42.0 | 4.09e-01 | 100.0% | 81.8% |
| 4iiwA01 | 3.30.1490.480 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Endolytic murein transglycosylase | 0.52 | 38.0 | 3.60e-01 | 84.2% | 72.4% |
| 2fmaA00 | 3.30.1490.140 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain | 0.50 | 39.0 | 3.94e-01 | 100.0% | 89.8% |
ECOD (73)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4128043 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 70.0 | 7.79e-01 | 93.0% | 100.0% |
| 4492966 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 75.0 | 7.66e-01 | 100.0% | 89.1% |
| 3720958 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 73.0 | 7.71e-01 | 98.2% | 96.0% |
| 3691772 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 72.0 | 7.31e-01 | 100.0% | 89.1% |
| 3671032 | 101.15.1.11 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP | 0.88 | 75.0 | 5.22e-01 | 100.0% | 31.5% |
| 3501971 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 69.0 | 6.85e-01 | 100.0% | 80.0% |
| 3651054 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.88 | 75.0 | 5.29e-01 | 100.0% | 33.5% |
| 3324708 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 71.0 | 6.96e-01 | 100.0% | 81.7% |
| 3375189 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.87 | 74.0 | 6.86e-01 | 100.0% | 74.3% |
| 3666767 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.87 | 74.0 | 5.92e-01 | 100.0% | 49.5% |
| 4680476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 70.0 | 6.48e-01 | 100.0% | 70.0% |
| 3337080 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.87 | 70.0 | 6.90e-01 | 100.0% | 81.7% |
| 2124917 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 70.0 | 4.92e-01 | 100.0% | 30.4% |
| 4149501 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 71.0 | 7.53e-01 | 100.0% | 100.0% |
| 2968802 | 101.15.1.11 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP | 0.86 | 72.0 | 5.32e-01 | 100.0% | 37.7% |
| 2074716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 68.0 | 7.22e-01 | 100.0% | 96.1% |
| 2047861 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 68.0 | 6.77e-01 | 100.0% | 84.5% |
| 3426433 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 68.0 | 6.69e-01 | 100.0% | 81.7% |
| 3458171 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 68.0 | 6.49e-01 | 100.0% | 75.4% |
| 3670445 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 69.0 | 4.21e-01 | 100.0% | 16.1% |
| 4069716 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.84 | 71.0 | 5.46e-01 | 100.0% | 43.3% |
| 3165082 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.84 | 66.0 | 7.02e-01 | 98.2% | 96.0% |
| 3636424 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.84 | 70.0 | 7.11e-01 | 100.0% | 92.7% |
| 3422876 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.83 | 72.0 | 7.10e-01 | 100.0% | 90.0% |
| 3925474 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 66.0 | 7.01e-01 | 100.0% | 98.0% |
| 3230171 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 66.0 | 6.95e-01 | 100.0% | 98.0% |
| 3232962 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 66.0 | 6.49e-01 | 100.0% | 81.7% |
| 3946658 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 66.0 | 6.16e-01 | 100.0% | 71.4% |
| 2895417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.82 | 70.0 | 6.27e-01 | 100.0% | 68.8% |
| 4379136 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 68.0 | 5.28e-01 | 100.0% | 44.3% |
| 5004560 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 69.0 | 7.01e-01 | 100.0% | 94.5% |
| 3413357 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 65.0 | 6.04e-01 | 100.0% | 70.0% |
| 3517460 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 65.0 | 6.61e-01 | 100.0% | 89.1% |
| 3413453 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 65.0 | 6.85e-01 | 100.0% | 98.0% |
| 4137479 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.80 | 63.0 | 5.48e-01 | 98.2% | 56.5% |
| 3261423 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.80 | 63.0 | 6.74e-01 | 94.7% | 100.0% |
| 3355076 | 101.15.1.6 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 | 0.80 | 65.0 | 6.45e-01 | 100.0% | 85.0% |
| 3269916 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.80 | 64.0 | 6.35e-01 | 96.5% | 83.3% |
| 3381619 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.80 | 67.0 | 4.20e-01 | 100.0% | 18.1% |
| 3587382 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.79 | 66.0 | 6.71e-01 | 100.0% | 94.5% |
| 3365578 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.78 | 71.0 | 6.21e-01 | 100.0% | 68.8% |
| 3359799 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.78 | 67.0 | 5.06e-01 | 100.0% | 40.6% |
| None | — | 0.78 | 67.0 | 5.14e-01 | 100.0% | 43.2% | |
| 3367888 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.78 | 69.0 | 6.36e-01 | 100.0% | 77.1% |
| 4008890 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.78 | 64.0 | 6.55e-01 | 100.0% | 96.4% |
| 1278327 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.77 | 69.0 | 6.30e-01 | 100.0% | 77.3% |
| 3417561 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.77 | 65.0 | 4.08e-01 | 100.0% | 18.3% |
| 3647286 | 101.15.1.7 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK | 0.77 | 65.0 | 5.91e-01 | 100.0% | 70.7% |
| 4483829 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.76 | 67.0 | 6.49e-01 | 100.0% | 90.8% |
| 3966498 | 101.15.1.3 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X | 0.76 | 67.0 | 6.39e-01 | 100.0% | 84.6% |
| 162111 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.76 | 60.0 | 5.43e-01 | 100.0% | 63.6% |
| 2124918 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.76 | 65.0 | 4.86e-01 | 100.0% | 39.7% |
| 3972010 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.74 | 61.0 | 6.05e-01 | 93.0% | 98.3% |
| 4180515 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.74 | 60.0 | 6.16e-01 | 100.0% | 96.3% |
| 3970261 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.74 | 63.0 | 6.45e-01 | 100.0% | 98.1% |
| 3166029 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.74 | 59.0 | 6.06e-01 | 100.0% | 94.5% |
| 5058234 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.73 | 61.0 | 6.08e-01 | 94.7% | 100.0% |
| 4995817 | 101.15.1.4 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 | 0.73 | 63.0 | 5.90e-01 | 100.0% | 78.6% |
| 4176074 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.72 | 64.0 | 6.32e-01 | 100.0% | 95.0% |
| 3716764 | 101.15.1.12 ↗ | alpha arrays › HTH › LysM domain › LysM domain › PF30403 | 0.72 | 63.0 | 6.23e-01 | 98.2% | 91.7% |
| 3611431 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.71 | 63.0 | 6.19e-01 | 98.2% | 91.7% |
| 3973526 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.71 | 62.0 | 5.26e-01 | 100.0% | 63.2% |
| 5016213 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.63 | 54.0 | 5.22e-01 | 100.0% | 96.9% |
| 3261909 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.61 | 52.0 | 4.65e-01 | 100.0% | 75.3% |
| 3473504 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.61 | 51.0 | 4.87e-01 | 100.0% | 91.4% |
| 4971978 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 50.0 | 3.40e-01 | 96.5% | 30.8% |
| 3757925 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.61 | 50.0 | 4.41e-01 | 100.0% | 68.4% |
| 3785267 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.61 | 49.0 | 4.64e-01 | 98.2% | 85.3% |
| 3781552 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.60 | 49.0 | 4.54e-01 | 100.0% | 97.5% |
| 3715717 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.59 | 50.0 | 4.73e-01 | 100.0% | 92.9% |
| 3385783 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 41.0 | 4.03e-01 | 86.0% | 98.5% |
| 3386585 | 3536.1.1.0 ↗ | a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains | 0.55 | 44.0 | 4.05e-01 | 89.5% | 81.3% |
| 3950673 | 3536.1.1.1 ↗ | a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › YceG | 0.54 | 44.0 | 4.20e-01 | 100.0% | 78.6% |