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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00349
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00349
Identity
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-59
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.73 | 50.0 | 4.73e-01 | 89.8% | 59.2% |
| 7wq5A01 | 3.30.730.10 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain | 0.71 | 49.0 | 5.00e-01 | 88.1% | 74.1% |
| 1ciiA02 | 3.30.305.10 | Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 | 0.70 | 45.0 | 3.77e-01 | 84.7% | 38.6% |
| 4ohxA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 47.0 | 3.14e-01 | 76.3% | 55.3% |
| 3nyiA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.64 | 57.0 | 4.26e-01 | 96.6% | 76.6% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 41.0 | 3.93e-01 | 88.1% | 58.6% |
| 4zahA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 47.0 | 3.65e-01 | 86.4% | 99.2% |
| 3votB02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.58 | 49.0 | 3.17e-01 | 96.6% | 29.4% |
| 5dynA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 43.0 | 3.68e-01 | 88.1% | 79.2% |
| 7r9xA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.56 | 44.0 | 2.98e-01 | 86.4% | 30.3% |
| 6gcdA00 | 3.30.920.90 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › | 0.55 | 47.0 | 3.44e-01 | 94.9% | 93.1% |
| 2oplA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.55 | 48.0 | 3.50e-01 | 100.0% | 39.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3813458 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.74 | 51.0 | 5.52e-01 | 88.1% | 86.0% |
| 3327473 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.65 | 48.0 | 3.97e-01 | 88.1% | 42.1% |
| 3580612 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.65 | 46.0 | 3.38e-01 | 74.6% | 54.8% |
| 3400449 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 45.0 | 3.27e-01 | 98.3% | 25.1% |
| 5002376 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 46.0 | 3.87e-01 | 79.7% | 64.8% |
| 3939681 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.62 | 53.0 | 3.36e-01 | 98.3% | 34.5% |
| 4929491 | 304.5.1.13 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3574 | 0.61 | 49.0 | 4.12e-01 | 93.2% | 85.3% |
| 3840997 | 371.1.1.2 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_2 | 0.61 | 30.0 | 2.37e-01 | 89.8% | 23.5% |
| 3263533 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 47.0 | 2.99e-01 | 86.4% | 94.3% |
| 3753952 | 330.3.1.1 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 | 0.60 | 48.0 | 3.78e-01 | 98.3% | 40.8% |
| 3577533 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.60 | 52.0 | 4.11e-01 | 96.6% | 70.8% |
| 3604850 | 868.1.1.9 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › RESC1_2 | 0.60 | 50.0 | 3.20e-01 | 93.2% | 21.9% |
| 5053264 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.60 | 49.0 | 3.60e-01 | 96.6% | 50.9% |
| 3299579 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 46.0 | 4.37e-01 | 100.0% | 71.4% |
| 4973414 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.58 | 48.0 | 3.52e-01 | 91.5% | 90.9% |
| 3968902 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.57 | 48.0 | 3.27e-01 | 98.3% | 36.3% |
| 3593924 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.57 | 47.0 | 3.84e-01 | 94.9% | 49.2% |
| 3333267 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.57 | 45.0 | 3.86e-01 | 93.2% | 52.6% |
| 3278906 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.57 | 45.0 | 3.39e-01 | 89.8% | 41.2% |
| 3452819 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.57 | 44.0 | 3.72e-01 | 83.1% | 76.5% |
| 3564496 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.57 | 43.0 | 3.32e-01 | 86.4% | 34.0% |
| 3677000 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 44.0 | 3.36e-01 | 86.4% | 42.0% |
| 4938091 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.56 | 43.0 | 3.42e-01 | 89.8% | 47.1% |
| 3451695 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 48.0 | 4.11e-01 | 93.2% | 61.1% |
| 3479510 | 3662.1.1.0 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related | 0.55 | 41.0 | 3.35e-01 | 88.1% | 41.7% |
| 4469857 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.54 | 43.0 | 3.41e-01 | 84.7% | 73.9% |
| 3939178 | 304.48.1.37 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 | 0.54 | 42.0 | 2.96e-01 | 84.7% | 62.7% |
| 5056801 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.53 | 41.0 | 3.38e-01 | 89.8% | 43.2% |
| 3180371 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.53 | 43.0 | 3.29e-01 | 89.8% | 78.6% |
| 3778175 | 5052.1.1.1 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF | 0.52 | 47.0 | 2.77e-01 | 100.0% | 91.3% |
| 1827072 | 223.1.1.1 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY | 0.52 | 42.0 | 3.02e-01 | 91.5% | 52.8% |
| 3666982 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 38.0 | 3.41e-01 | 86.4% | 57.9% |
| 3211641 | 2.1.1.270 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RSD-2 | 0.51 | 36.0 | 3.26e-01 | 76.3% | 98.8% |
| 3479658 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 38.0 | 3.38e-01 | 83.1% | 95.6% |
| 3835676 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.51 | 40.0 | 2.83e-01 | 88.1% | 28.0% |
| 5067017 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.50 | 36.0 | 2.60e-01 | 79.7% | 100.0% |
D2
medium
residues 60-128
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tpiB01 | 3.30.70.3040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 45.0 | 4.09e-01 | 81.2% | 98.9% |
| 2l6aA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 44.0 | 4.01e-01 | 94.2% | 88.2% |
| 4id8A00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 41.0 | 4.19e-01 | 84.1% | 90.8% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.52 | 36.0 | 3.49e-01 | 75.4% | 65.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978396 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.60 | 46.0 | 4.13e-01 | 85.5% | 99.0% |
| 5007630 | 1085.1.1.0 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 | 0.57 | 46.0 | 4.31e-01 | 88.4% | 85.9% |
| 3244751 | 101.1.2.461 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NPRL3 | 0.57 | 44.0 | 3.89e-01 | 84.1% | 72.4% |
| 5063158 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.53 | 37.0 | 3.95e-01 | 76.8% | 88.1% |