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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00432
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00432
Identity
- Kingdom:
- phage
Quality
64.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-60
D2
medium
residues 61-134
Domain cluster:
rep: S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00454__D3-61
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a10I00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.72 | 57.0 | 6.10e-01 | 87.8% | 100.0% |
| 7xkcA01 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.71 | 57.0 | 5.59e-01 | 91.9% | 80.2% |
| 1cseI00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.70 | 54.0 | 5.78e-01 | 85.1% | 100.0% |
| 3w0eA00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.66 | 54.0 | 5.58e-01 | 91.9% | 100.0% |
| 5e0yA00 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.64 | 46.0 | 4.76e-01 | 89.2% | 80.9% |
| 3py9A01 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.64 | 46.0 | 4.93e-01 | 75.7% | 97.0% |
| 3ahcA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.64 | 45.0 | 2.86e-01 | 74.3% | 36.0% |
| 2gjwC01 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.63 | 43.0 | 3.53e-01 | 70.3% | 47.9% |
| 2kudA01 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.63 | 43.0 | 4.46e-01 | 89.2% | 75.7% |
| 2dbsA00 | 3.40.1350.20 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 41.0 | 4.09e-01 | 70.3% | 82.5% |
| 3anuA01 | 2.40.37.20 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain | 0.61 | 44.0 | 3.56e-01 | 77.0% | 97.2% |
| 2mgvA00 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.60 | 44.0 | 4.72e-01 | 78.4% | 98.5% |
| 4jmjA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.60 | 43.0 | 3.32e-01 | 78.4% | 67.4% |
| 6dx5A00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.59 | 46.0 | 3.62e-01 | 86.5% | 72.8% |
| 4bouA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.57 | 45.0 | 3.68e-01 | 86.5% | 74.5% |
| 4v15A01 | 2.40.37.20 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain | 0.57 | 43.0 | 3.47e-01 | 81.1% | 95.1% |
| 5a6sA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 39.0 | 2.96e-01 | 77.0% | 94.8% |
| 2dirA01 | 3.30.2300.10 | Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily | 0.55 | 37.0 | 3.57e-01 | 70.3% | 93.1% |
| 1xxmC01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.55 | 47.0 | 4.75e-01 | 95.9% | 98.6% |
| 3h5iA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 37.0 | 3.15e-01 | 71.6% | 88.0% |
| 1yzyA01 | 3.40.50.10840 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Putative sugar-binding, N-terminal domain | 0.54 | 41.0 | 2.95e-01 | 85.1% | 30.8% |
| 2pfiB01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 41.0 | 3.42e-01 | 86.5% | 67.4% |
| 3tm4A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.53 | 42.0 | 3.24e-01 | 90.5% | 66.1% |
| 2ww5A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 37.0 | 2.85e-01 | 77.0% | 99.0% |
| 2g6zA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 41.0 | 3.37e-01 | 86.5% | 69.4% |
| 4ki9A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 41.0 | 3.30e-01 | 87.8% | 63.1% |
| 4cgsA00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.51 | 35.0 | 2.76e-01 | 70.3% | 56.5% |
| 7eqiB01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 39.0 | 3.12e-01 | 89.2% | 91.9% |
| 2esbA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 37.0 | 2.93e-01 | 78.4% | 98.1% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3674451 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.74 | 60.0 | 6.35e-01 | 89.2% | 100.0% |
| 1831278 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.74 | 62.0 | 6.45e-01 | 93.2% | 100.0% |
| 4401481 | 294.2.1.0 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C | 0.73 | 47.0 | 4.69e-01 | 91.9% | 64.0% |
| 151608 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.73 | 58.0 | 5.93e-01 | 86.5% | 90.1% |
| 3742000 | 294.1.1.0 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors | 0.73 | 51.0 | 5.75e-01 | 83.8% | 100.0% |
| 3972532 | 294.1.1.2 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › Inhibitor_I78 | 0.72 | 57.0 | 6.01e-01 | 86.5% | 100.0% |
| 3741562 | 294.1.1.2 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › Inhibitor_I78 | 0.72 | 54.0 | 5.80e-01 | 79.7% | 100.0% |
| 3196538 | 294.1.1.2 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › Inhibitor_I78 | 0.72 | 58.0 | 6.02e-01 | 89.2% | 100.0% |
| 2874838 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.70 | 57.0 | 5.50e-01 | 91.9% | 78.6% |
| 4533266 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.70 | 57.0 | 5.86e-01 | 90.5% | 92.9% |
| 3457336 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.70 | 55.0 | 5.65e-01 | 85.1% | 100.0% |
| 4042904 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.68 | 48.0 | 5.18e-01 | 89.2% | 85.7% |
| 1005023 | 294.1.1.2 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › Inhibitor_I78 | 0.66 | 54.0 | 5.56e-01 | 91.9% | 100.0% |
| 3638982 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.64 | 50.0 | 3.62e-01 | 85.1% | 75.9% |
| 4397539 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.64 | 47.0 | 5.06e-01 | 77.0% | 100.0% |
| 4147122 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.64 | 48.0 | 4.92e-01 | 78.4% | 98.6% |
| 5038175 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.63 | 43.0 | 4.22e-01 | 70.3% | 85.0% |
| 1120788 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.63 | 43.0 | 4.46e-01 | 89.2% | 75.7% |
| 5019344 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.63 | 46.0 | 4.99e-01 | 89.2% | 90.5% |
| 4214934 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.62 | 47.0 | 4.90e-01 | 79.7% | 94.3% |
| 4110313 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.62 | 48.0 | 4.97e-01 | 81.1% | 97.1% |
| 4420926 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.62 | 46.0 | 4.96e-01 | 78.4% | 100.0% |
| 1141805 | 4247.1.1.1 ↗ | a+b duplicates or obligate multimers › TTHC002-like › TTHC002-like › TTHC002-like › DUF5647 | 0.62 | 41.0 | 4.09e-01 | 70.3% | 82.5% |
| 3288204 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.61 | 46.0 | 4.89e-01 | 90.5% | 90.8% |
| 4196487 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.61 | 47.0 | 3.54e-01 | 85.1% | 69.2% |
| 4231180 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.60 | 45.0 | 4.74e-01 | 78.4% | 96.9% |
| 4371646 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.60 | 47.0 | 4.96e-01 | 91.9% | 93.8% |
| 3279899 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.60 | 49.0 | 3.67e-01 | 91.9% | 68.2% |
| 4381179 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.60 | 44.0 | 4.79e-01 | 78.4% | 98.4% |
| 3592513 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 49.0 | 3.22e-01 | 94.6% | 74.2% |
| 2800195 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.59 | 44.0 | 4.89e-01 | 79.7% | 98.3% |
| 2429119 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.59 | 45.0 | 3.57e-01 | 86.5% | 72.8% |
| 4022826 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 46.0 | 3.57e-01 | 86.5% | 67.6% |
| 3960451 | 294.2.1.0 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C | 0.58 | 44.0 | 4.69e-01 | 89.2% | 92.3% |
| 3611373 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.58 | 46.0 | 3.76e-01 | 87.8% | 84.3% |
| 3927599 | 2007.1.13.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase | 0.58 | 39.0 | 3.19e-01 | 70.3% | 57.9% |
| 5040986 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.57 | 44.0 | 4.20e-01 | 85.1% | 72.2% |
| 3586987 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.57 | 43.0 | 4.68e-01 | 79.7% | 98.3% |
| 3401572 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.57 | 38.0 | 2.95e-01 | 70.3% | 77.8% |
| 4981670 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.56 | 40.0 | 2.90e-01 | 77.0% | 86.4% |
| 4346910 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.56 | 46.0 | 3.20e-01 | 91.9% | 71.5% |
| 3993036 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.56 | 44.0 | 3.67e-01 | 87.8% | 75.6% |
| 3596273 | 2004.5.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain | 0.55 | 42.0 | 3.06e-01 | 83.8% | 53.2% |
| 3992999 | 3105.1.1.4 ↗ | a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 | 0.55 | 37.0 | 2.81e-01 | 70.3% | 50.0% |
| 4384896 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.54 | 44.0 | 3.17e-01 | 91.9% | 80.0% |
| 1826179 | 2002.1.1.55 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_25 | 0.54 | 38.0 | 2.78e-01 | 75.7% | 87.0% |
| 4928739 | 2007.2.3.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK | 0.53 | 40.0 | 3.25e-01 | 86.5% | 61.8% |
| 3940209 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.53 | 41.0 | 3.16e-01 | 86.5% | 55.1% |
| 3926182 | 2002.1.1.101 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N | 0.52 | 38.0 | 2.73e-01 | 78.4% | 86.9% |
| 3991481 | 221.1.1.163 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › GRHL1_C | 0.52 | 35.0 | 3.49e-01 | 86.5% | 65.0% |
| 3715192 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 42.0 | 3.19e-01 | 94.6% | 88.7% |