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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00440
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00440
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 55-160
Domain cluster:
rep: IMGVR_UViG_3300003830_000837-3300003830-Ga0051980_1000007438__D41-138
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.68 | 46.0 | 5.19e-01 | 95.3% | 91.3% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.66 | 41.0 | 3.86e-01 | 97.2% | 51.6% |
| 3qkbA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.60 | 42.0 | 4.39e-01 | 90.6% | 80.9% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 29.0 | 3.27e-01 | 89.6% | 62.7% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 31.0 | 3.28e-01 | 89.6% | 60.0% |
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.56 | 33.0 | 3.11e-01 | 86.8% | 45.3% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.55 | 36.0 | 3.77e-01 | 88.7% | 72.0% |
| 4d53A00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.55 | 36.0 | 3.37e-01 | 91.5% | 53.4% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 31.0 | 3.44e-01 | 98.1% | 71.8% |
| 4r6uA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 31.0 | 3.19e-01 | 95.3% | 56.3% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 32.0 | 3.43e-01 | 100.0% | 68.9% |
| 5u1xA02 | 2.60.490.10 | Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain | 0.53 | 46.0 | 3.43e-01 | 95.3% | 82.5% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.53 | 35.0 | 3.58e-01 | 97.2% | 68.9% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 28.0 | 2.97e-01 | 85.8% | 55.4% |
| 1kcvL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 34.0 | 3.53e-01 | 97.2% | 68.9% |
| 3bp6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 30.0 | 3.22e-01 | 97.2% | 65.9% |
| 2abyA00 | 3.30.70.1980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF09406, DUF2004 | 0.50 | 27.0 | 2.63e-01 | 91.5% | 43.4% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.50 | 35.0 | 3.55e-01 | 94.3% | 72.2% |
| 2petA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 3.41e-01 | 99.1% | 65.5% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 30.0 | 3.11e-01 | 86.8% | 61.4% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5017209 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.68 | 40.0 | 3.54e-01 | 89.6% | 40.7% |
| 4980535 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.66 | 38.0 | 4.03e-01 | 89.6% | 63.2% |
| 1942474 | 3685.1.1.0 ↗ | a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain | 0.65 | 44.0 | 5.01e-01 | 97.2% | 92.5% |
| 3604263 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.64 | 38.0 | 3.44e-01 | 88.7% | 42.3% |
| 5079012 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.64 | 38.0 | 3.44e-01 | 88.7% | 42.8% |
| 3211894 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 40.0 | 4.17e-01 | 94.3% | 74.0% |
| 3604508 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.58 | 31.0 | 3.35e-01 | 84.9% | 58.9% |
| 3283943 | 304.8.1.80 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF6196 | 0.57 | 32.0 | 3.69e-01 | 85.8% | 80.0% |
| 4045503 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.56 | 28.0 | 3.23e-01 | 88.7% | 64.0% |
| 5033257 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.55 | 26.0 | 3.02e-01 | 90.6% | 57.3% |
| 3863526 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.55 | 37.0 | 3.63e-01 | 100.0% | 62.6% |
| 4948091 | 304.116.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › DUF460 | 0.54 | 35.0 | 3.65e-01 | 84.9% | 70.0% |
| 5011307 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.53 | 34.0 | 3.57e-01 | 84.9% | 69.0% |
| 3895938 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.53 | 34.0 | 3.50e-01 | 94.3% | 67.0% |
| None | — | 0.53 | 37.0 | 2.68e-01 | 100.0% | 25.2% | |
| 5045865 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.53 | 34.0 | 3.64e-01 | 86.8% | 73.7% |
| 3893730 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.53 | 32.0 | 3.36e-01 | 97.2% | 65.0% |
| 4970335 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.52 | 30.0 | 3.25e-01 | 85.8% | 65.6% |
| 3412911 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.52 | 34.0 | 3.39e-01 | 98.1% | 61.7% |
| 3842698 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.52 | 36.0 | 2.61e-01 | 100.0% | 25.2% |
| 3499772 | 327.11.2.20 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH | 0.52 | 30.0 | 3.25e-01 | 84.0% | 67.8% |
| 3487954 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.50 | 29.0 | 3.26e-01 | 84.0% | 71.8% |