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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00443

Bact-Vir

LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00443

Identity

Kingdom:
phage

Quality

78.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-111
PDB
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c48A00 2.40.50.70 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.82 60.0 6.71e-01 100.0% 97.1%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 73.0 6.66e-01 100.0% 87.0%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.77 70.0 6.81e-01 100.0% 88.8%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 64.0 5.85e-01 100.0% 70.7%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.74 55.0 5.92e-01 100.0% 93.2%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 58.0 4.90e-01 100.0% 51.4%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 59.0 5.48e-01 100.0% 69.7%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 64.0 6.35e-01 100.0% 94.5%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 64.0 6.16e-01 100.0% 88.0%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.71 49.0 4.38e-01 71.9% 100.0%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 61.0 5.70e-01 100.0% 77.1%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 63.0 5.96e-01 100.0% 95.2%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 62.0 5.73e-01 100.0% 91.2%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 63.0 5.96e-01 100.0% 88.3%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 63.0 6.05e-01 100.0% 90.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 38.0 4.36e-01 100.0% 76.2%
1uapA00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 58.0 5.07e-01 100.0% 64.1%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 60.0 5.62e-01 100.0% 88.2%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 49.0 5.36e-01 98.9% 100.0%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 59.0 5.00e-01 100.0% 76.6%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 58.0 5.29e-01 100.0% 76.3%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 50.0 5.30e-01 100.0% 98.7%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.63 47.0 5.12e-01 100.0% 97.3%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 58.0 5.04e-01 100.0% 74.4%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 51.0 5.00e-01 100.0% 81.6%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.61 29.0 3.84e-01 100.0% 87.0%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 45.0 4.12e-01 82.0% 99.1%
3qcpA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 37.0 3.01e-01 70.8% 66.1%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 44.0 3.89e-01 88.8% 92.2%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.53 27.0 3.39e-01 80.9% 87.5%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.53 36.0 3.06e-01 84.3% 42.9%
3b1bA01 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.52 43.0 3.07e-01 95.5% 60.8%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.51 34.0 3.63e-01 74.2% 77.2%
3c8iA00 2.40.410.10 Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily 0.51 44.0 3.96e-01 97.8% 72.4%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.50 35.0 3.00e-01 94.4% 42.3%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943546 2.1.1.136 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3577 0.76 70.0 6.48e-01 100.0% 94.5%
3705888 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 67.0 6.13e-01 100.0% 73.9%
4625119 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.75 59.0 5.95e-01 100.0% 84.3%
4233828 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.74 58.0 5.73e-01 100.0% 78.9%
3639738 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.74 50.0 5.73e-01 70.8% 94.0%
3783432 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.73 67.0 6.31e-01 100.0% 93.3%
3741507 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.73 68.0 6.51e-01 100.0% 94.0%
4600806 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.73 58.0 5.38e-01 100.0% 68.2%
3690510 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.73 67.0 6.24e-01 100.0% 88.2%
3430247 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.73 57.0 5.43e-01 100.0% 71.2%
3413189 2.1.1.141 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.73 67.0 5.41e-01 100.0% 62.4%
4084495 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.73 67.0 6.31e-01 100.0% 90.5%
3924081 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.72 65.0 5.62e-01 100.0% 72.1%
4296288 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.71 65.0 6.17e-01 100.0% 93.3%
3616890 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.71 64.0 5.88e-01 100.0% 85.2%
4929168 2.3.1.0 beta barrels › OB-fold › TIMP-like › TIMP-like 0.70 64.0 5.74e-01 100.0% 72.5%
4024738 220.1.1.243 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF30062 0.70 49.0 4.70e-01 73.0% 63.8%
3489010 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 59.0 5.26e-01 100.0% 64.8%
3595817 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 63.0 5.90e-01 100.0% 92.7%
3599571 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 64.0 5.84e-01 100.0% 87.8%
4025160 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.70 63.0 5.61e-01 100.0% 86.4%
3963029 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 57.0 5.86e-01 100.0% 92.9%
3392389 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 64.0 5.75e-01 100.0% 81.7%
4170378 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.69 62.0 5.74e-01 100.0% 87.0%
3691681 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.69 63.0 5.51e-01 100.0% 83.8%
3808110 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.69 63.0 5.26e-01 100.0% 64.7%
4327241 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.69 63.0 6.11e-01 100.0% 93.9%
3365669 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.69 63.0 5.84e-01 100.0% 86.4%
3488538 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 62.0 5.44e-01 100.0% 66.9%
3712376 2.1.1.225 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.69 63.0 5.67e-01 100.0% 84.2%
4264144 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.69 62.0 5.91e-01 100.0% 87.6%
381191 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.68 63.0 5.96e-01 100.0% 88.3%
222748 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.68 61.0 6.10e-01 96.6% 95.6%
3738689 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.68 53.0 5.39e-01 100.0% 87.1%
4122961 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.68 62.0 5.97e-01 100.0% 94.0%
4068016 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.68 62.0 5.87e-01 100.0% 90.5%
4626934 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 62.0 5.85e-01 100.0% 92.4%
3814481 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 61.0 5.24e-01 100.0% 77.9%
317 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.66 60.0 5.62e-01 100.0% 88.2%
5014254 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 34.0 4.13e-01 88.8% 76.7%
3601108 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 59.0 5.60e-01 100.0% 87.6%
4193996 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.65 47.0 4.41e-01 76.4% 82.7%
5016563 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 59.0 5.34e-01 100.0% 74.2%
3190995 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.64 44.0 3.48e-01 100.0% 36.0%
377 2.1.1.90 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › ssDBP 0.64 50.0 5.30e-01 100.0% 98.7%
4012953 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 44.0 3.65e-01 100.0% 42.0%
1555393 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.63 51.0 4.49e-01 100.0% 59.2%
3994138 2.3.1.0 beta barrels › OB-fold › TIMP-like › TIMP-like 0.62 56.0 4.61e-01 100.0% 61.3%
3933099 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.62 43.0 4.42e-01 92.1% 75.3%
4030635 1.1.7.2 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.62 48.0 3.49e-01 84.3% 84.0%
3871082 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 49.0 4.16e-01 86.5% 85.3%
3687369 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.61 45.0 4.36e-01 100.0% 69.0%
4127062 1.1.7.2 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.61 47.0 3.50e-01 84.3% 96.2%
4018672 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.61 42.0 3.83e-01 100.0% 54.8%
3739762 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.60 42.0 3.86e-01 74.2% 91.7%
3217097 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 41.0 3.64e-01 73.0% 53.3%
5074611 2.26.1.1 beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.59 47.0 4.89e-01 100.0% 98.8%
3284948 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 49.0 5.03e-01 97.8% 97.6%
3489971 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 40.0 3.65e-01 71.9% 61.7%
5078629 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 3.82e-01 74.2% 63.3%
5010552 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.57 41.0 3.68e-01 77.5% 85.4%
3693249 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 46.0 4.10e-01 91.0% 91.5%
3927710 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 45.0 3.77e-01 91.0% 74.5%
3960510 3844.2.1.0 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone 0.55 39.0 2.75e-01 73.0% 55.7%
5032193 2.26.1.1 beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.55 48.0 4.55e-01 98.9% 98.1%
4015154 101.1.8.10 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.54 48.0 3.73e-01 100.0% 69.5%
3214289 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 45.0 4.15e-01 95.5% 73.0%
4873579 4019.1.1.3 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.53 36.0 3.78e-01 75.3% 79.5%
4025470 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 44.0 4.17e-01 100.0% 79.0%