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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00457

Bact-Vir

LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00457

Identity

Kingdom:
phage

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-97
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.67 51.0 3.60e-01 80.4% 76.4%
5f47B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 46.0 3.93e-01 72.2% 90.1%
2cntA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 45.0 3.86e-01 71.1% 95.4%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 52.0 4.48e-01 88.7% 62.7%
2k5tA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 45.0 4.10e-01 72.2% 75.8%
1tiqB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 44.0 3.67e-01 71.1% 79.2%
2zpaA03 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 44.0 3.43e-01 72.2% 90.2%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 43.0 4.26e-01 71.1% 100.0%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 44.0 3.25e-01 74.2% 42.9%
3holA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.61 47.0 3.99e-01 82.5% 92.2%
1q2yA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 42.0 3.71e-01 71.1% 74.3%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 42.0 4.45e-01 70.1% 98.8%
2qmlA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 48.0 3.86e-01 85.6% 72.5%
2vi7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 42.0 3.49e-01 71.1% 96.9%
2mhgA00 2.20.130.30 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 0.60 36.0 4.12e-01 78.4% 78.7%
4xpkA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 42.0 3.75e-01 73.2% 75.2%
3pzjB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 48.0 3.93e-01 87.6% 70.5%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.60 34.0 4.07e-01 77.3% 83.3%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.59 49.0 4.94e-01 97.9% 89.7%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.58 41.0 2.77e-01 74.2% 35.8%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 50.0 4.21e-01 96.9% 66.7%
2cxaA02 3.40.630.70 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal domain 0.58 41.0 3.38e-01 73.2% 59.5%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.58 44.0 3.61e-01 81.4% 86.7%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.57 36.0 4.06e-01 70.1% 83.8%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 44.0 3.55e-01 83.5% 86.7%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 4.15e-01 79.4% 83.3%
2pmeA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 44.0 3.04e-01 82.5% 41.3%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 4.18e-01 79.4% 91.2%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 4.11e-01 87.6% 65.7%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.56 49.0 4.03e-01 96.9% 70.6%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.55 43.0 3.48e-01 83.5% 88.3%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 46.0 3.72e-01 91.8% 47.5%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 43.0 3.88e-01 87.6% 77.2%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.55 37.0 3.53e-01 70.1% 76.1%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 40.0 3.80e-01 79.4% 94.1%
1xf8A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 48.0 3.95e-01 95.9% 79.4%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.53 39.0 3.33e-01 75.3% 64.0%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 44.0 4.02e-01 91.8% 68.7%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 40.0 3.37e-01 83.5% 65.2%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.96e-01 91.8% 71.8%
3lv0A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.52 44.0 3.94e-01 92.8% 93.5%
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.52 47.0 3.55e-01 100.0% 88.3%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.87e-01 90.7% 68.5%
7b3aA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.74e-01 90.7% 87.2%
1g0hA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 43.0 3.90e-01 92.8% 93.4%
6wqbA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 45.0 3.96e-01 95.9% 91.4%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.62e-01 95.9% 88.6%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.51 41.0 3.76e-01 89.7% 92.6%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 44.0 3.85e-01 95.9% 64.4%
4qxdA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 44.0 3.75e-01 95.9% 95.6%
2p3nA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.50 42.0 3.80e-01 91.8% 91.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596915 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.73 61.0 3.74e-01 89.7% 38.6%
3990496 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.71 47.0 5.49e-01 80.4% 94.3%
None 0.69 60.0 3.69e-01 94.8% 79.5%
3225336 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.67 46.0 4.01e-01 71.1% 55.2%
4972588 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.67 58.0 3.99e-01 94.8% 39.7%
3519579 295.1.1.20 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Intu_longin_3 0.66 43.0 4.71e-01 93.8% 81.2%
1680313 213.1.1.17 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1122 0.65 51.0 4.11e-01 86.6% 49.2%
3944955 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.64 45.0 4.00e-01 73.2% 84.3%
3707133 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.64 57.0 4.41e-01 96.9% 87.6%
3597350 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.64 47.0 5.04e-01 89.7% 89.2%
4990576 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.63 44.0 3.87e-01 73.2% 76.6%
4472438 220.4.1.10 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › DUF3586 0.62 45.0 4.86e-01 89.7% 88.1%
3225830 844.1.1.4 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.61 55.0 4.33e-01 99.0% 90.5%
4945717 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 43.0 3.89e-01 74.2% 68.1%
5001279 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.61 51.0 3.51e-01 92.8% 47.7%
4971247 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.60 44.0 4.79e-01 88.7% 93.8%
3367547 844.1.1.4 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.59 53.0 4.24e-01 99.0% 74.2%
4988423 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.59 37.0 4.06e-01 72.2% 76.2%
3238997 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 49.0 4.38e-01 87.6% 69.9%
3218632 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.59 43.0 4.38e-01 74.2% 86.2%
4964966 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.59 41.0 3.52e-01 71.1% 88.4%
3588413 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.59 53.0 4.51e-01 99.0% 94.8%
3499443 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 42.0 2.73e-01 75.3% 21.7%
4978331 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.58 40.0 4.53e-01 89.7% 100.0%
2764515 7579.1.1.49 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › GCE_fung 0.58 41.0 2.74e-01 73.2% 40.7%
3889588 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.58 44.0 3.65e-01 81.4% 84.0%
4324615 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.58 51.0 4.40e-01 99.0% 94.8%
3520717 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.58 50.0 4.33e-01 94.8% 92.0%
3628642 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 42.0 2.81e-01 74.2% 35.1%
4001680 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 4.14e-01 73.2% 78.4%
3936017 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 45.0 4.30e-01 83.5% 90.0%
3624211 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.56 48.0 4.07e-01 94.8% 91.5%
3402824 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.55 41.0 2.68e-01 77.3% 34.6%
4028641 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 41.0 2.49e-01 80.4% 18.2%
1554358 3146.1.1.1 a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H 0.55 43.0 2.69e-01 84.5% 27.2%
5078150 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 46.0 4.01e-01 89.7% 92.4%
4243201 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 50.0 4.02e-01 100.0% 74.6%
3743129 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 41.0 4.00e-01 78.4% 83.8%
3404508 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.96e-01 83.5% 35.8%
3615623 2004.11.1.0 a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain 0.54 41.0 3.26e-01 79.4% 46.5%
4203573 213.1.1.75 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB, Acetyltransf_6 0.54 47.0 3.88e-01 93.8% 88.8%
3227515 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 45.0 4.05e-01 88.7% 67.4%
5000990 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.54 41.0 3.53e-01 81.4% 75.5%
4463771 3347.1.1.0 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 0.53 47.0 4.58e-01 95.9% 96.2%
3016757 213.1.1.7 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB 0.53 46.0 3.74e-01 93.8% 80.9%
899 4295.1.1.1 beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › ADC 0.52 47.0 3.50e-01 100.0% 81.6%
5049480 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 44.0 3.85e-01 91.8% 88.3%
3610541 73.1.1.11 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › DUF3586 0.52 38.0 4.08e-01 90.7% 90.6%
4947855 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 2.96e-01 96.9% 68.0%
3591998 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.52 39.0 3.80e-01 80.4% 73.6%
3604518 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.51 36.0 3.66e-01 74.2% 76.0%
4951804 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 40.0 3.64e-01 86.6% 97.9%
5004871 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 37.0 3.82e-01 87.6% 83.3%
5078475 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 44.0 3.89e-01 95.9% 97.2%
5071037 2004.1.1.1221 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27431 0.51 43.0 2.68e-01 100.0% 15.6%
4977522 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 44.0 3.77e-01 94.8% 76.8%
4945459 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.51 45.0 3.12e-01 96.9% 94.3%
5028231 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.51 35.0 3.36e-01 72.2% 64.6%
3228340 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.50 40.0 4.01e-01 97.9% 82.0%
3185066 4295.1.1.1 beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › ADC 0.50 45.0 3.21e-01 100.0% 89.8%