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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00498
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00498
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-72_107-146
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11539.14 best | DUF3228 | 45.0 | 1.30e-11 | 66.1% | 34.0% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pd0A01 | 3.30.2310.50 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Protein of unknown function (DUF3228), domain 1 | 0.85 | 81.0 | 7.94e-01 | 100.0% | 97.5% |
| 4fbdA01 | 3.30.2310.50 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Protein of unknown function (DUF3228), domain 1 | 0.81 | 73.0 | 7.33e-01 | 100.0% | 93.0% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.64 | 31.0 | 2.63e-01 | 99.1% | 27.7% |
| 3qv0A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.58 | 31.0 | 2.68e-01 | 99.1% | 32.4% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.57 | 40.0 | 4.31e-01 | 99.1% | 87.4% |
| 2db2A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 33.0 | 3.58e-01 | 93.8% | 70.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589620 | 4312.1.1.11 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE-like_toxin | 0.59 | 43.0 | 4.73e-01 | 100.0% | 96.7% |
| 3717900 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.54 | 37.0 | 2.52e-01 | 100.0% | 20.1% |
| 5065450 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 38.0 | 3.49e-01 | 97.3% | 56.8% |
D2
medium
residues 73-106_147-192
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11539.14 best | DUF3228 | 64.1 | 1.80e-17 | 60.0% | 22.2% |
| PF11539.14 | DUF3228 | 36.3 | 6.30e-09 | 45.0% | 16.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 861750 | 234.4.1.1 ↗ | a+b two layers › Microbial ribonucleases-like › Hypothetical protein cgd2_2020 › Hypothetical protein cgd2_2020 › DUF3228 | 0.90 | 85.0 | 6.10e-01 | 100.0% | 64.2% |
| 3743859 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.56 | 42.0 | 2.75e-01 | 81.2% | 57.1% |
| 4979121 | 3281.1.1.0 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related | 0.54 | 39.0 | 2.31e-01 | 77.5% | 34.6% |