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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00503

Bact-Vir

LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00503

Identity

Kingdom:
phage

Quality

85.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-191
PDB
Domain cluster: rep: MN094788.1__QDH83552.1__X__00162__D1-27_66-169
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10307.16 best HAD_SAK_1 63.8 2.70e-17 89.9% 69.5%
D2 high residues 218-338
PDB
Domain cluster: rep: MN695334.1__QGT54496.1__b3_0254__00238__D2-120
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wojA00 3.90.1740.10 Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily 0.91 87.0 7.05e-01 100.0% 97.1%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 28.0 3.84e-01 95.0% 84.5%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 30.0 4.11e-01 97.5% 100.0%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 31.0 3.94e-01 99.2% 100.0%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 28.0 3.67e-01 95.0% 89.6%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 29.0 3.75e-01 95.0% 92.5%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.54 45.0 4.50e-01 100.0% 87.8%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 27.0 3.05e-01 100.0% 60.9%
2vbuA01 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 44.0 4.33e-01 90.1% 90.8%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 34.0 3.54e-01 76.0% 68.7%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 31.0 3.90e-01 100.0% 100.0%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.52 44.0 4.38e-01 100.0% 90.3%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 33.0 3.30e-01 98.3% 63.4%
3nwzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 34.0 3.19e-01 75.2% 55.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3497100 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.89 84.0 6.47e-01 100.0% 96.7%
3480974 264.1.1.3 ↗ beta barrels › LigT-like › LigT-related › LigT-related › CNPase 0.89 84.0 6.52e-01 100.0% 98.3%
3608079 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.87 84.0 7.90e-01 100.0% 97.1%
3594510 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.87 83.0 6.69e-01 100.0% 97.6%
3709497 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.87 83.0 7.71e-01 100.0% 93.8%
3835887 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.87 82.0 7.55e-01 100.0% 99.3%
3606700 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.86 81.0 6.76e-01 100.0% 98.5%
3611297 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.85 81.0 7.57e-01 100.0% 95.1%
3673377 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.85 80.0 7.45e-01 99.2% 100.0%
3744887 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.85 80.0 7.10e-01 100.0% 98.8%
3203190 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.85 80.0 7.46e-01 100.0% 93.1%
3182852 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.83 79.0 6.53e-01 100.0% 96.0%
3264230 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.82 79.0 7.62e-01 100.0% 97.7%
3591493 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.79 74.0 6.89e-01 100.0% 95.2%
4053455 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.65 34.0 4.38e-01 75.2% 87.1%
3205096 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.59 54.0 4.68e-01 100.0% 85.9%
4505258 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 34.0 3.53e-01 75.2% 60.0%
3963617 2.4.1.4 ↗ beta barrels › OB-fold › MOP-like › MOP-like › FbpC_C_terminal 0.58 29.0 3.78e-01 94.2% 87.7%
419 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 30.0 3.63e-01 95.0% 80.3%
4929367 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 48.0 4.87e-01 100.0% 94.2%
4927128 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.55 30.0 3.30e-01 100.0% 64.0%
5078248 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 28.0 3.53e-01 96.7% 84.3%
3943796 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 32.0 3.81e-01 100.0% 91.3%