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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00505
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00505
Identity
- Kingdom:
- phage
Quality
79.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-58
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dw8A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.59 | 47.0 | 4.03e-01 | 96.5% | 90.6% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.59 | 48.0 | 4.10e-01 | 96.5% | 93.1% |
| 3snoA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.57 | 38.0 | 3.01e-01 | 78.9% | 31.5% |
| 4h1sB02 | 3.90.780.10 | Alpha Beta › Alpha-Beta Complex › 5'-nucleotidase; domain 2 › 5'-Nucleotidase, C-terminal domain | 0.57 | 42.0 | 2.96e-01 | 82.5% | 93.3% |
| 2yjnB00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.56 | 45.0 | 2.88e-01 | 94.7% | 59.6% |
| 3dnpA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 45.0 | 3.78e-01 | 96.5% | 92.9% |
| 4jm1A00 | 3.30.300.300 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.56 | 44.0 | 4.01e-01 | 94.7% | 71.4% |
| 8dpkD01 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.56 | 44.0 | 2.93e-01 | 93.0% | 32.1% |
| 2c6zA00 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.55 | 44.0 | 2.92e-01 | 93.0% | 29.7% |
| 5vyeA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 39.0 | 3.39e-01 | 78.9% | 65.7% |
| 3u6uC00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.55 | 43.0 | 2.92e-01 | 91.2% | 80.5% |
| 4d3dA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 43.0 | 3.19e-01 | 91.2% | 53.8% |
| 3gr0D01 | 3.30.70.1780 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 35.0 | 3.76e-01 | 73.7% | 100.0% |
| 3pp9B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 41.0 | 3.01e-01 | 89.5% | 37.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5000684 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.67 | 50.0 | 3.94e-01 | 80.7% | 40.0% |
| 3512644 | 2006.1.1.37 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 | 0.60 | 47.0 | 3.27e-01 | 94.7% | 56.2% |
| 3946474 | 2006.1.1.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.60 | 47.0 | 3.15e-01 | 93.0% | 49.8% |
| 2075906 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.59 | 47.0 | 4.03e-01 | 96.5% | 90.6% |
| 3975385 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.59 | 47.0 | 4.04e-01 | 96.5% | 89.5% |
| 3944463 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.59 | 47.0 | 4.04e-01 | 96.5% | 89.5% |
| 3941592 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.59 | 47.0 | 3.93e-01 | 94.7% | 96.4% |
| 4032021 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.59 | 47.0 | 4.03e-01 | 96.5% | 92.4% |
| 3594539 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.58 | 47.0 | 4.01e-01 | 96.5% | 94.3% |
| 4010106 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.58 | 47.0 | 3.91e-01 | 94.7% | 96.4% |
| 4071149 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.58 | 47.0 | 3.97e-01 | 96.5% | 89.5% |
| 3741997 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.57 | 44.0 | 3.27e-01 | 86.0% | 41.8% |
| 3836441 | 3003.1.1.0 ↗ | a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | 0.56 | 40.0 | 3.28e-01 | 77.2% | 62.6% |
| 3164474 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.56 | 44.0 | 3.83e-01 | 96.5% | 91.4% |
| 2075904 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.56 | 45.0 | 3.78e-01 | 96.5% | 92.9% |
| 3978721 | 3261.1.1.5 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › Yop-YscD_ppl_2nd | 0.56 | 44.0 | 4.40e-01 | 93.0% | 96.7% |
| 3976935 | 2006.1.1.37 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 | 0.56 | 42.0 | 2.85e-01 | 89.5% | 50.9% |
| 4267744 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.55 | 42.0 | 2.93e-01 | 93.0% | 81.0% |
| 3639626 | 109.4.1.493 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Noc2 | 0.55 | 40.0 | 2.65e-01 | 80.7% | 41.5% |
| 4993777 | 327.3.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain | 0.54 | 42.0 | 3.82e-01 | 93.0% | 69.3% |
| 4134419 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.54 | 41.0 | 2.86e-01 | 91.2% | 80.3% |
| 4106221 | 327.10.1.11 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NII | 0.53 | 42.0 | 3.86e-01 | 93.0% | 92.5% |
| 4618617 | 232.1.1.6 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › DDAH_eukar | 0.52 | 44.0 | 2.88e-01 | 96.5% | 32.1% |
| 4055915 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.52 | 37.0 | 2.99e-01 | 77.2% | 37.5% |
| 2390328 | 327.8.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GSPII protein E N-terminal domain-like › GSPII protein E N-terminal domain-like › MshEN | 0.52 | 40.0 | 3.69e-01 | 94.7% | 66.3% |
| 4046434 | 327.10.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N | 0.51 | 39.0 | 3.56e-01 | 93.0% | 87.1% |
| 4192195 | 327.10.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N | 0.50 | 40.0 | 3.63e-01 | 94.7% | 92.9% |