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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00506

Bact-Vir

LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00506

Identity

Kingdom:
phage

Quality

51.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1009-1065
PDB
D2 medium residues 1066-1143
PDB
D3 medium residues 1144-1218
PDB
D4 medium residues 1234-1347
PDB
D5 medium residues 1360-1458
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.71 34.0 4.58e-01 83.8% 100.0%
6wqbA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 56.0 5.02e-01 100.0% 63.6%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.67 38.0 3.83e-01 89.9% 55.1%
4xnhC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 55.0 4.71e-01 98.0% 57.9%
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 54.0 4.82e-01 91.9% 69.3%
1fy7A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 58.0 5.27e-01 100.0% 84.3%
3efaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 53.0 4.66e-01 97.0% 61.6%
1qsmD00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 55.0 4.84e-01 98.0% 87.5%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 53.0 5.46e-01 94.9% 97.9%
8a9nA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 54.0 4.96e-01 94.9% 99.2%
3owcB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 55.0 4.57e-01 96.0% 58.8%
2fiaB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 53.0 4.53e-01 92.9% 59.1%
1s3zA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 54.0 4.73e-01 97.0% 65.3%
1n71B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 50.0 4.21e-01 94.9% 50.3%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.61 41.0 3.98e-01 89.9% 61.5%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.61 41.0 3.60e-01 89.9% 48.2%
4xpkA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 48.0 4.33e-01 94.9% 61.0%
3eo4D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 53.0 4.60e-01 100.0% 65.4%
1hp1A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.61 44.0 3.08e-01 75.8% 92.1%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.60 50.0 4.30e-01 89.9% 80.0%
1v0fA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 37.0 2.55e-01 88.9% 17.2%
4ua3A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 52.0 4.29e-01 100.0% 57.5%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 50.0 4.76e-01 97.0% 83.3%
4gniA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 33.0 3.56e-01 98.0% 64.4%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 44.0 4.10e-01 82.8% 70.5%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 43.0 3.95e-01 80.8% 69.7%
2ozgA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 48.0 4.11e-01 96.0% 57.9%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 33.0 3.61e-01 90.9% 74.7%
4kt3B00 3.10.450.170 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens 0.54 41.0 3.75e-01 78.8% 85.2%
2pmeA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 43.0 3.02e-01 84.8% 27.0%
4k6lG00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.54 48.0 3.64e-01 96.0% 71.0%
1atrA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 32.0 3.39e-01 98.0% 65.2%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.72e-01 98.0% 74.7%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 37.0 2.41e-01 87.9% 17.2%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 37.0 3.33e-01 94.9% 51.4%
5c82A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 45.0 3.76e-01 94.9% 58.8%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.71e-01 89.9% 88.3%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 35.0 3.64e-01 81.8% 72.6%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.52 32.0 3.31e-01 88.9% 63.3%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 40.0 3.00e-01 86.9% 47.3%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.53e-01 91.9% 75.6%
3d2fA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 32.0 3.36e-01 99.0% 67.7%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.51 40.0 2.86e-01 87.9% 34.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940380 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.75 68.0 5.21e-01 100.0% 45.0%
3534496 213.1.1.5 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MOZ_SAS 0.68 58.0 5.06e-01 100.0% 62.1%
4874611 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.68 57.0 5.20e-01 100.0% 69.2%
1562389 3308.2.1.0 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein 0.67 39.0 3.03e-01 90.9% 27.3%
3740184 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.64 58.0 5.13e-01 100.0% 71.0%
3254312 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.64 57.0 4.19e-01 100.0% 43.8%
3925418 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.64 56.0 4.43e-01 98.0% 50.7%
3790217 213.1.1.34 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_13 0.63 57.0 4.59e-01 100.0% 65.3%
None 0.63 56.0 3.72e-01 100.0% 43.3%
5050920 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.63 56.0 4.45e-01 100.0% 49.8%
3801555 213.1.1.34 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_13 0.62 56.0 4.50e-01 100.0% 63.6%
3733755 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 54.0 4.10e-01 97.0% 47.9%
3249235 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.62 54.0 4.50e-01 98.0% 55.9%
3515274 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 54.0 4.48e-01 100.0% 57.8%
5074874 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 53.0 4.34e-01 96.0% 67.6%
3488488 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 54.0 4.24e-01 100.0% 51.8%
7858 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.60 44.0 3.08e-01 75.8% 92.0%
169213 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.60 54.0 4.64e-01 100.0% 65.2%
4033495 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 51.0 4.57e-01 93.9% 70.0%
5072044 213.1.1.17 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1122 0.60 44.0 3.39e-01 100.0% 34.5%
3240395 213.1.1.34 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_13 0.60 53.0 4.37e-01 100.0% 59.2%
3998469 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.60 49.0 4.40e-01 97.0% 62.8%
3212575 213.1.1.49 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1248 0.59 50.0 4.47e-01 99.0% 64.0%
3688464 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.58 51.0 4.42e-01 98.0% 98.1%
5074751 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.58 51.0 4.30e-01 100.0% 63.2%
4947933 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.58 50.0 4.27e-01 100.0% 68.0%
4023601 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 50.0 4.24e-01 100.0% 61.1%
5020013 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 49.0 4.34e-01 97.0% 68.7%
5066271 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 49.0 4.26e-01 100.0% 66.1%
3694942 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 48.0 4.14e-01 96.0% 60.0%
3459574 213.1.1.72 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 0.56 49.0 4.37e-01 100.0% 70.7%
1141828 213.1.1.36 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_17 0.56 48.0 4.24e-01 96.0% 64.2%
4936480 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 49.0 4.12e-01 100.0% 62.3%
4979282 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.56 48.0 4.06e-01 100.0% 61.7%
4947966 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 48.0 4.11e-01 100.0% 65.3%
3969288 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 48.0 4.14e-01 100.0% 66.7%
5072937 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 48.0 4.08e-01 100.0% 84.1%
4951631 243.3.1.37 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF4901 0.55 35.0 3.42e-01 91.9% 56.5%
5050460 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 47.0 3.87e-01 99.0% 74.7%
2549178 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.54 41.0 3.94e-01 91.9% 69.9%
5051870 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 47.0 3.93e-01 100.0% 56.8%
5031205 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 47.0 3.88e-01 99.0% 75.5%
4010148 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 45.0 3.87e-01 100.0% 61.1%
3506845 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.53 44.0 3.30e-01 89.9% 39.6%
3923837 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.51 44.0 2.77e-01 90.9% 24.1%
3588583 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 33.0 2.96e-01 87.9% 44.8%
3682806 213.1.1.71 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PF29847 0.51 46.0 3.84e-01 100.0% 74.1%
3596002 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 37.0 3.43e-01 77.8% 95.4%