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LacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00511
Bact-VirLacPavin_0818_WC40_scaffold_354720_prodigal-single.1__X__X__00511
Identity
- Kingdom:
- phage
Quality
67.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-153
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wfxA02 | 3.20.170.30 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › | 0.75 | 42.0 | 5.47e-01 | 100.0% | 94.4% |
| 2cb4A00 | 3.90.210.10 | Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A | 0.58 | 44.0 | 3.64e-01 | 100.0% | 46.1% |
| 4k6lG00 | 3.90.210.10 | Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A | 0.58 | 46.0 | 4.03e-01 | 100.0% | 57.1% |
| 6tl1B01 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.56 | 44.0 | 4.03e-01 | 100.0% | 63.3% |
| 1bcpA00 | 3.90.210.10 | Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A | 0.55 | 47.0 | 4.11e-01 | 100.0% | 62.1% |
| 4p6vF01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.52 | 30.0 | 3.61e-01 | 98.0% | 87.4% |
| 1gs0A02 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.51 | 46.0 | 4.12e-01 | 100.0% | 68.8% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4125268 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.78 | 43.0 | 5.66e-01 | 100.0% | 93.3% |
| 5061730 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.78 | 43.0 | 5.65e-01 | 100.0% | 93.3% |
| 4303698 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.78 | 43.0 | 5.43e-01 | 100.0% | 88.3% |
| 4008473 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.77 | 42.0 | 5.26e-01 | 100.0% | 83.8% |
| 4622968 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.77 | 42.0 | 5.49e-01 | 100.0% | 92.2% |
| 4994805 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.77 | 42.0 | 5.17e-01 | 100.0% | 81.6% |
| 4296568 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.76 | 42.0 | 5.37e-01 | 100.0% | 88.4% |
| 5008044 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.76 | 43.0 | 5.41e-01 | 100.0% | 89.5% |
| 3106804 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.75 | 42.0 | 5.11e-01 | 100.0% | 82.5% |
| 5077692 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.73 | 42.0 | 5.11e-01 | 100.0% | 83.8% |
| 4865028 | 237.1.1.24 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Scabin-like | 0.66 | 45.0 | 4.97e-01 | 100.0% | 84.8% |
| 4404123 | 237.1.1.24 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Scabin-like | 0.62 | 45.0 | 3.75e-01 | 100.0% | 45.6% |
| 1150484 | 237.1.1.24 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Scabin-like | 0.58 | 44.0 | 3.64e-01 | 100.0% | 46.1% |
| 1546410 | 237.1.1.7 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Pertussis_S1 | 0.53 | 46.0 | 3.79e-01 | 100.0% | 53.0% |
D2
high
residues 167-332
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00086__D1-125
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x5yA00 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.75 | 50.0 | 5.03e-01 | 100.0% | 65.5% |
| 1wfxA02 | 3.20.170.30 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › | 0.74 | 40.0 | 5.35e-01 | 98.8% | 97.8% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.59 | 27.0 | 3.77e-01 | 75.9% | 89.6% |
| 2lycA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.50 | 29.0 | 3.26e-01 | 78.3% | 70.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3711853 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.65 | 45.0 | 4.29e-01 | 100.0% | 60.5% |
| 2512677 | 237.1.1.11 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES | 0.61 | 53.0 | 5.14e-01 | 100.0% | 84.2% |
| 3597511 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.58 | 45.0 | 4.27e-01 | 100.0% | 68.2% |
| 3548098 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.53 | 32.0 | 3.86e-01 | 83.7% | 94.3% |
| 3413690 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.51 | 26.0 | 3.39e-01 | 86.1% | 90.6% |
D3
medium
residues 356-468